Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1927
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   2.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.8  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 250 TRLIIELSRKLRQNTSCQCLTFTMFLADL 336
           TRLI++  +  ++N    C++ + F+A L
Sbjct: 196 TRLIVQFRKSFQRNDKSMCISSSSFIAHL 224


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 212 HSSSNRDKPERDKLG*LLNCRVN*GKTPLVNA*PLPCFLLISL 340
           H  SN+ +  RD +   +   ++      ++A PLPCFL + L
Sbjct: 322 HIRSNKFEDTRDLIS-YIESPISWNLKYFISALPLPCFLSVQL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,430
Number of Sequences: 5004
Number of extensions: 30238
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)