Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1927
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-10|CAB02760.1|   91|Caenorhabditis elegans Hypothetical p...    28   3.0  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    27   5.2  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    27   5.2  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    27   5.2  

>Z81038-10|CAB02760.1|   91|Caenorhabditis elegans Hypothetical
           protein C25A1.15 protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 147 KWT*RKLFAAFVYLNSTSSISVTRHQIVISQREIN 251
           +W  R+  A F YL+STSS +    +I+  +RE N
Sbjct: 4   EWCEREGRARFFYLSSTSSPNTVEDRIITMKRERN 38


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 63   EQNKFR-SIFMIKKKTTD*HRTSNSKES 143
            E+N+ R ++  +KKKTT+ H T N KE+
Sbjct: 1679 ERNELRDTLARMKKKTTETHTTINQKET 1706


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 63   EQNKFR-SIFMIKKKTTD*HRTSNSKES 143
            E+N+ R ++  +KKKTT+ H T N KE+
Sbjct: 1752 ERNELRDTLARMKKKTTETHTTINQKET 1779


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 63   EQNKFR-SIFMIKKKTTD*HRTSNSKES 143
            E+N+ R ++  +KKKTT+ H T N KE+
Sbjct: 1752 ERNELRDTLARMKKKTTETHTTINQKET 1779


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,292,123
Number of Sequences: 27780
Number of extensions: 160176
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)