Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1924
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    49   4e-08
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    49   4e-08
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    46   4e-07
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    43   2e-06
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   1.7  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    23   1.7  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    22   5.2  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.9  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 61  IQKESTLHLVLR 72


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 61  IQKESTLHLVLR 72



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 137 IQKESTLHLVLR 148



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 213 IQKESTLHLVLR 224



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 289 IQKESTLHLVLR 300



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 365 IQKESTLHLVLR 376



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 517 IQKESTLHLVLR 528



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 593 IQKESTLHLVLR 604



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 669 IQKESTLHLVLR 680



 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QR IF G+ L+D + L++Y+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 331 VHGK-VVHLVQR 363
           +  +  +HLV R
Sbjct: 441 IQKESTLHLVLR 452


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 19/61 (31%), Positives = 38/61 (62%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QRLIF G+ L+D + L++Y+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 331 V 333
           +
Sbjct: 61  I 61


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 37/61 (60%)
 Frame = +1

Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
           ++  +KTL      + V+   T++ +K K++++ GI    QR IF G+ L+D + L++Y+
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 331 V 333
           +
Sbjct: 109 I 109



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +1

Query: 235 KVREQMGIEIHLQRLIFCGRVLQDDKKLTEYDVHGK-VVHLVQR 363
           K++++ GI    QRLIF G+ L+D + L++Y++  +  +HLV R
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 44


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 123 LRCRLINACAYLKKNDLYL-*KIYERTHVF 37
           LRC LI+ C Y+     YL  K+  R H F
Sbjct: 222 LRCWLISKCIYVFNPRYYLEKKVTRRLHRF 251


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 123 LRCRLINACAYLKKNDLYL-*KIYERTHVF 37
           LRC LI+ C Y+     YL  K+  R H F
Sbjct: 222 LRCWLISKCIYVFNPRYYLEKKVTRRLHRF 251


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 SSKRKYGSRWVLRYIFRD 277
           S ++K GSR ++RY+ ++
Sbjct: 77  SQRQKDGSRTIIRYLIKN 94


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 538 LETDSFAAVAQSRNLVLKPIDV*FGDASH 452
           +ETD F  V+ ++  +LK I    G +S+
Sbjct: 359 IETDDFRGVSGTKYPILKAIHQTLGGSSN 387


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,487
Number of Sequences: 336
Number of extensions: 3517
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)