Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1924
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 58 1e-09
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 1e-07
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 52 1e-07
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 49 7e-07
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 49 7e-07
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 49 7e-07
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 49 7e-07
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 49 7e-07
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 2.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 5.6
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 7.5
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 9.9
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 9.9
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
I TIK + + ++VD E +V LKE + IE QRLI+ GRVL+D++ L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 331 VH-GKVVHLVQRAPPSPQSRQSTINP-LGPASAHIHTSEGQNNGL 459
+ G +HLV+ +P + + ++ +I +G NN L
Sbjct: 64 IQDGHSIHLVKTLGQNPAAAATNVSDRTQQVPTNIQAGQGANNPL 108
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 163 IKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYDVH-G 339
+KTL E+ +D V ++KE+V E+ GI QRLI+ G+ + DDK Y + G
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGG 64
Query: 340 KVVHLV 357
V+HLV
Sbjct: 65 SVLHLV 70
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 51.6 bits (118), Expect = 1e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMS-VDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEY 327
+ T K L +S V + + +LKEK++ Q E+ Q+LI+ GR+L DDK + EY
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 328 DVHGK--VVHLVQRAPPSPQSRQSTINP 405
++ + +V +V R S + +S +P
Sbjct: 61 NIKEQDFIVCMVSRPKTSTSTPKSAASP 88
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 137 IQKESTLHLVLR 148
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 213 IQKESTLHLVLR 224
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 289 IQKESTLHLVLR 300
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 365 IQKESTLHLVLR 376
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T+ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 306 IL*NSSTENESLKMYLNTHLLPYFLFELLYCDLIIHRHL 190
+L N + S+K +++ HL+P+ F LLY +I+ L
Sbjct: 132 VLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSL 170
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 339 ESCSPCSTCATKSPISAVYYKPP 407
++C C TC K P+ + +K P
Sbjct: 599 QNCVHCKTCDIKDPLQGIQWKTP 621
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 559 IRRLIADIKTSLAQLNAHITGTGNSDGIRPAVSLL 663
IRR I ++++++ L I+ + D IRP +S+L
Sbjct: 545 IRRKIDNLRSAIKYLKPPISADASYDEIRPLISIL 579
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 660 EAHCWTNAIRISRASYMGIKLSQRCFDICYQTSNKFHTSSCWRQIHLLL 514
E WT A +AS G+ + F+ Y TS K+ S +++ LL
Sbjct: 811 ELEAWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQ-SELKNELYALL 858
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 521 CCCCSIKKSGVKA 483
C CC++K +G+KA
Sbjct: 127 CMCCTVKDNGIKA 139
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 293 EFYKMTKSSQNMTSTGKLFTLFNVRHQVP 379
EF K+ S T + KLFT+ ++R Q+P
Sbjct: 413 EFLKINFSYLTPTLSQKLFTVLDLRSQLP 441
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 553 PYVQLLETDSFAAVAQSRNLVLKPIDV*FGDASHCFVLQKYEYV 422
P VQ+ +TD + RN P+D+ G H F Y+ +
Sbjct: 133 PNVQISDTDFDNISTEPRNQTTSPLDLETGQGDH-FCTSLYDLI 175
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 9.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +3
Query: 423 TYSYF*RTKQWLASPNQTSIGFNTRFLD*ATAANESVSNSWTYG-----IYSTS--DSRY 581
+Y Y RT +++ N +N+RF+ + S+ S G IYS+S +
Sbjct: 92 SYEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPSPAIYSSSMATNLN 151
Query: 582 QNIFGST*CPYNWHGKF*WHSSSSEPP 662
+NI ++ YN+H S+ P
Sbjct: 152 KNINSTSVPAYNFHNSMTSDFDSASQP 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,041
Number of Sequences: 5004
Number of extensions: 57844
Number of successful extensions: 158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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