Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1924
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 54 7e-08
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 48 5e-06
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 48 5e-06
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 48 5e-06
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 48 5e-06
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 48 5e-06
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 46 2e-05
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 31 0.56
U55854-3|AAA98012.1| 59|Caenorhabditis elegans Hypothetical pr... 31 0.56
AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical ... 29 3.0
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 3.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 3.9
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 6.9
Z94800-1|CAB08161.2| 491|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z82288-9|CAB05328.2| 491|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73104-9|CAA97438.2| 491|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical... 27 9.1
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 163 IKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYDV-HG 339
+KTL E+ ++ V+++KEKV E+ GI QRLIF G+ + DDK +Y V G
Sbjct: 5 VKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGG 64
Query: 340 KVVHLV 357
V+HLV
Sbjct: 65 SVLHLV 70
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 137 IQKESTLHLVLR 148
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 213 IQKESTLHLVLR 224
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 289 IQKESTLHLVLR 300
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 365 IQKESTLHLVLR 376
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 441 IQKESTLHLVLR 452
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCG 291
++ +KTL + V+ T++ +K K++++ GI QRLIF G
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 137 IQKESTLHLVLR 148
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 213 IQKESTLHLVLR 224
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 289 IQKESTLHLVLR 300
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 365 IQKESTLHLVLR 376
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 517 IQKESTLHLVLR 528
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 593 IQKESTLHLVLR 604
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 669 IQKESTLHLVLR 680
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 745 IQKESTLHLVLR 756
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 821 IQKESTLHLVLR 832
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 441 IQKESTLHLVLR 452
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 137 IQKESTLHLVLR 148
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 213 IQKESTLHLVLR 224
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 289 IQKESTLHLVLR 300
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 365 IQKESTLHLVLR 376
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 441 IQKESTLHLVLR 452
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 517 IQKESTLHLVLR 528
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 593 IQKESTLHLVLR 604
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 669 IQKESTLHLVLR 680
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 745 IQKESTLHLVLR 756
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 821 IQKQSTLHLVLR 832
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
++ +KTL + V+ T++ +K K++++ GI QRLIF G+ L+D + L++Y+
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 331 VHGK-VVHLVQR 363
+ + +HLV R
Sbjct: 61 IQKESTLHLVLR 72
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
I T+KTLD +++ + T+Q L + R +M I+ QR+I GRVL + +
Sbjct: 21 IRVTLKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAAG 80
Query: 331 V-HGKVVHLVQRAPPSPQSRQSTI 399
+ G+ VHLV R P R + +
Sbjct: 81 ISDGQTVHLVDRGPSGENDRPNVM 104
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 151 IEFTIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYD 330
I T+KTLD +++ + T+Q L + R +M I+ QR+I GRVL + +
Sbjct: 21 IRVTLKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAAG 80
Query: 331 V-HGKVVHLVQRAPPSPQSRQSTI 399
+ G+ VHLV R P R + +
Sbjct: 81 ISDGQTVHLVDRGPSGENDRPNVM 104
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +1
Query: 160 TIKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYDVHG 339
++KTL +S+ + TV+ LK KV+ + G+ QRLIF L++D+ L Y++
Sbjct: 164 SVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRD 223
Query: 340 K-VVHLVQR 363
+ ++HLV R
Sbjct: 224 EDIIHLVSR 232
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 343 VVHLVQRAPPSPQSRQSTINPLGPASAHIHTSEGQNNGLHHQIRHLLALTPDFLIEQQQQ 522
V + VQ PP P+S +ST P+ P + ++ + Q+N L H TP F Q QQ
Sbjct: 130 VYNKVQSKPPRPESSKST--PIVPDAQNVLDTSVQSNDLSWVDAHRFG-TPSFKSSQLQQ 186
>U55854-3|AAA98012.1| 59|Caenorhabditis elegans Hypothetical
protein C04G6.5 protein.
Length = 59
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 390 LPRLGTWWRTLNKVNNFPVDVIFCELF 310
LP L WW T N +D+IFC LF
Sbjct: 17 LPPLAIWWHTKECDINVLIDIIFCLLF 43
>AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical
protein Y42G9A.4b protein.
Length = 614
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 163 IKTLDAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQRLIFCGRVLQDDKKLTEYDV 333
+++LDA EM + E++V + +E + +EI ++ I ++ D KL + +V
Sbjct: 20 VRSLDANGKEMVIRREVSVTETRESRDTSLKVEIPSEQEIELPVIVHDKPKLIKQEV 76
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 343 VVHLVQRAPPSPQSRQSTINPLGPASAHIHTSEGQNNGLHHQIRHLLALTPDFLIEQQQQ 522
V ++ Q S Q+ I +G AS+H H Q G Q HL+ +QQQQ
Sbjct: 2006 VQNMHQNQYNSSQNPPIPIRQIGAASSHQHDQGSQGPGGKPQAYHLVQQGSQQQQQQQQQ 2065
Query: 523 MNL 531
L
Sbjct: 2066 ATL 2068
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 343 VVHLVQRAPPSPQSRQSTINPLGPASAHIHTSEGQNNGLHHQIRHLLALTPDFLIEQQQQ 522
V ++ Q S Q+ I +G AS+H H Q G Q HL+ +QQQQ
Sbjct: 2006 VQNMHQNQYNSSQNPPIPIRQIGAASSHQHDQGSQGPGGKPQAYHLVQQGSQQQQQQQQQ 2065
Query: 523 MNL 531
L
Sbjct: 2066 ATL 2068
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 406 LGPASAHIHTSEGQNNGLHH 465
L P + H+HT G ++G HH
Sbjct: 28 LAPPTVHVHTDGGHHHGHHH 47
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 334 HGKVVHLVQRAPPSPQSRQSTINPLGP 414
HGK + APP P RQ + P GP
Sbjct: 242 HGKTI--AGEAPPGPPGRQGEMGPQGP 266
>Z94800-1|CAB08161.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 275 DSFSVEEFYKMTKSSQNMTSTGKLFTLFNVRHQVPNLG 388
+S + Y++ S++N+ S+GK TL++++ N+G
Sbjct: 205 NSTHLGNLYQVMASNKNLISSGKSLTLYSLQAGFSNIG 242
>Z82288-9|CAB05328.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 275 DSFSVEEFYKMTKSSQNMTSTGKLFTLFNVRHQVPNLG 388
+S + Y++ S++N+ S+GK TL++++ N+G
Sbjct: 205 NSTHLGNLYQVMASNKNLISSGKSLTLYSLQAGFSNIG 242
>Z73104-9|CAA97438.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 275 DSFSVEEFYKMTKSSQNMTSTGKLFTLFNVRHQVPNLG 388
+S + Y++ S++N+ S+GK TL++++ N+G
Sbjct: 205 NSTHLGNLYQVMASNKNLISSGKSLTLYSLQAGFSNIG 242
>AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical
protein Y60A3A.24 protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 175 DAVNHEMSVDDEITVQQLKEKVREQMGIEIHLQR-LIF 285
DA N++ VD+E T +LKE+ +EQ+ +I +R L+F
Sbjct: 194 DAKNNQKLVDNEKTHSELKEE-KEQINADIDTKRNLLF 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,185,239
Number of Sequences: 27780
Number of extensions: 326501
Number of successful extensions: 967
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -