Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1923
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    74   5e-15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    50   6e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    39   2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    36   0.001
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   0.69 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   2.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 74.1 bits (174), Expect = 5e-15
 Identities = 32/38 (84%), Positives = 33/38 (86%)
 Frame = +3

Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
           DNGSGMCK GFAGDDAPRAVFP IVGRPRH G+MV  G
Sbjct: 11  DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMG 48



 Score = 48.4 bits (110), Expect = 3e-07
 Identities = 23/29 (79%), Positives = 23/29 (79%)
 Frame = +2

Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
           DSYV DEAQSK  ILTLKYPI HGI  NW
Sbjct: 51  DSYVGDEAQSKRGILTLKYPIEHGIVNNW 79



 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 103 GSTTMAPVCARTVSQEMMLLAPCS 174
           G TTM P  A  + +E+  LAP S
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSS 324


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 50.4 bits (115), Expect = 6e-08
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +3

Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVM 212
           DNGSG  K GFAGDD P+ +FP  VGR +H+ VM
Sbjct: 15  DNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48



 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
           D +V  EAQ+   +L ++ PI  GI  NW
Sbjct: 55  DMFVGSEAQNLRGLLKIQRPIERGIIQNW 83


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRP 194
           DNG+G  K G+A D+ PR  FP IVGRP
Sbjct: 9   DNGTGFVKVGYAKDNFPRFQFPSIVGRP 36



 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 227 INDSYV*DEAQSKICILTLKYPI*HGIFTNW 319
           I D  V DEA++   +L +KYP+ +GI  ++
Sbjct: 49  IKDVMVGDEAEAVRSLLQVKYPMENGIIRDF 79


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIV 185
           DNG+G  K G+AG+DAP  VFP ++
Sbjct: 11  DNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVG 188
           D GS   + GF+G+D P+ V P   G
Sbjct: 17  DPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 71  FKMCDEEVAGLVVRQWLRYV 130
           + MCDEE A L+V   L+Y+
Sbjct: 383 YMMCDEENAKLIVADLLQYL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,420
Number of Sequences: 5004
Number of extensions: 25164
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)