Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1923
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 77 4e-15
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 77 4e-15
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 77 4e-15
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 77 4e-15
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 77 4e-15
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 77 4e-15
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 77 4e-15
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 77 4e-15
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 77 4e-15
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 77 4e-15
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 77 4e-15
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 77 4e-15
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 77 4e-15
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 58 1e-09
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 50 3e-07
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 42 7e-05
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 38 0.002
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 30 0.41
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 27 2.9
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 27 2.9
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 27 2.9
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 27 2.9
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 26 5.1
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 26 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 6.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 6.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 6.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 6.8
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 25 8.9
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 25 8.9
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 25 8.9
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 25 8.9
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 25 8.9
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 25 8.9
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 25 8.9
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 25 8.9
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 25 8.9
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 25 8.9
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 11 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 48
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +2
Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
DSYV DEAQSK ILTLKYPI HGI TNW
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNW 79
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/81 (43%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD++VA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/81 (40%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD++VA L++ + P G+ G + DSYV DEA
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/81 (43%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD++VA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/81 (43%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD++VA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
DNGSGMCK GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 12 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 49
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/81 (44%), Positives = 40/81 (49%)
Frame = +2
Query: 77 MCDEEVAGLVVRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGSLWDINDSYV*DEA 256
MCD+EVA LVV + P G+ G + DSYV DEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEA 59
Query: 257 QSKICILTLKYPI*HGIFTNW 319
QSK ILTLKYPI HGI TNW
Sbjct: 60 QSKRGILTLKYPIEHGIVTNW 80
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 58.4 bits (135), Expect = 1e-09
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +3
Query: 138 GFAGDDAPRAVFPLIVGRPRHQGVMVRYG 224
GFAGDDAPRAVFP IVGRPRHQGVMV G
Sbjct: 7 GFAGDDAPRAVFPSIVGRPRHQGVMVGMG 35
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +2
Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
DSYV DEAQSK ILTLKYPI HGI TNW
Sbjct: 38 DSYVGDEAQSKRGILTLKYPIEHGIVTNW 66
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +2
Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
DSYV DEAQSK ILTLKYPI HGI TNW
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNW 36
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQGVM 212
DNGSG+ K GFAG+ P+ F VGRP++ VM
Sbjct: 14 DNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVM 47
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 233 DSYV*DEAQSKICILTLKYPI*HGIFTNW 319
D ++ +A+S + +++YP+ HGI NW
Sbjct: 54 DIFIGPKAESNRGLFSIEYPMEHGIVNNW 82
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 111 DNGSGMCKDGFAGDDAPRAVFPLIVGRP 194
DNG+G K G+AG + P +FP +VGRP
Sbjct: 12 DNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 SGRDGSLWDINDSYV*DEAQSKICI-LTLKYPI*HGIFTNW 319
+ R G+ D D ++ DEA S T+KYPI HGI +W
Sbjct: 53 NNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDW 93
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 90 KLPGW*YDNGSGMCKDGFAGDDAPRAVFP 176
+LP DNG+G K G+AG+ P+ + P
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIP 33
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 255 ASSHT*ESLMSHNEPSRPDGGAFPRSRG 172
A S S S N+PS P+GG +SRG
Sbjct: 327 APSSASSSSSSKNKPSTPNGGRIGKSRG 354
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 255 ASSHT*ESLMSHNEPSRPDGGAFPRSRG 172
A S S S N+PS P+GG +SRG
Sbjct: 364 APSSASSSSSSKNKPSTPNGGRIGKSRG 391
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 255 ASSHT*ESLMSHNEPSRPDGGAFPRSRG 172
A S S S N+PS P+GG +SRG
Sbjct: 327 APSSASSSSSSKNKPSTPNGGRIGKSRG 354
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 255 ASSHT*ESLMSHNEPSRPDGGAFPRSRG 172
A S S S N+PS P+GG +SRG
Sbjct: 364 APSSASSSSSSKNKPSTPNGGRIGKSRG 391
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 288 YLRVRIHILLCASSHT*ESLMSHNEPSRPDGGAFPRSRGTR 166
Y R ++ I+LC + + E M +NE S P F G R
Sbjct: 301 YTRYKVGIMLCKNEQSTEEQMYNNEFSTPSFDEFLDFLGQR 341
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 288 YLRVRIHILLCASSHT*ESLMSHNEPSRPDGGAFPRSRGTR 166
Y R ++ I+LC + + E M +NE S P F G R
Sbjct: 301 YTRYKVGIMLCKNEQSTEEQMYNNEFSTPSFDEFLDFLGQR 341
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 193 GLPTIKGNTARGASSPAKPSLHIP-EPLSYYQPG 95
G P GN +GAS+P +P P +P PG
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG 156
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 193 GLPTIKGNTARGASSPAKPSLHIP-EPLSYYQPG 95
G P GN +GAS+P +P P +P PG
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG 156
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 193 GLPTIKGNTARGASSPAKPSLHIP-EPLSYYQPG 95
G P GN +GAS+P +P P +P PG
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG 156
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 193 GLPTIKGNTARGASSPAKPSLHIP-EPLSYYQPG 95
G P GN +GAS+P +P P +P PG
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG 156
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 226 VP*RTITP*WRGLPTIKGNTARGASSPAKPSLHIPEPL 113
+P T +G+P +G R +SP +P++H EPL
Sbjct: 527 IPKSATTANIQGIP--RGARDRSVTSPPQPTIHENEPL 562
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 190 LPTIKGNTARGASSPAKPSLHIPEPLS 110
LPT RG +SP+ P+ + EPLS
Sbjct: 518 LPTDNFRGGRGFASPSPPTSLLSEPLS 544
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 226 VP*RTITP*WRGLPTIKGNTARGASSPAKPSLHIPEPL 113
+P T +G+P +G R +SP +P++H EPL
Sbjct: 527 IPKSATTANIQGIP--RGARDRSVTSPPQPTIHENEPL 562
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 87 KKLPGW*YDNGSGMCK 134
+++P W YD SG CK
Sbjct: 1333 REIPRWAYDKASGSCK 1348
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 87 KKLPGW*YDNGSGMCK 134
+++P W YD SG CK
Sbjct: 1751 REIPRWAYDKASGSCK 1766
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 190 LPTIKGNTARGASSPAKPSLHIPEPLS 110
LPT RG +SP+ P+ + EPLS
Sbjct: 276 LPTDNFRGGRGFASPSPPTSLLSEPLS 302
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 190 LPTIKGNTARGASSPAKPSLHIPEPLS 110
LPT RG +SP+ P+ + EPLS
Sbjct: 212 LPTDNFRGGRGFASPSPPTSLLSEPLS 238
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 190 LPTIKGNTARGASSPAKPSLHIPEPLS 110
LPT RG +SP+ P+ + EPLS
Sbjct: 441 LPTDNFRGGRGFASPSPPTSLLSEPLS 467
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 190 LPTIKGNTARGASSPAKPSLHIPEPLS 110
LPT RG +SP+ P+ + EPLS
Sbjct: 518 LPTDNFRGGRGFASPSPPTSLLSEPLS 544
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
efl-1 mutant phenotypeprotein 1 protein.
Length = 4177
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 319 PVSEDSVLDGVFEGQDTYFALCLISYIRVI 230
PVS DSV F +D Y CL+S +R++
Sbjct: 232 PVSSDSVPSQQFSKEDLY---CLLSRVRML 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,568,052
Number of Sequences: 27780
Number of extensions: 154651
Number of successful extensions: 456
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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