Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1923
(319 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C prot... 23 1.2
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 22 1.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.7
AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein. 21 4.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 4.7
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 4.7
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 20 6.3
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 20 6.3
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 20 8.3
DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein. 20 8.3
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 20 8.3
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 20 8.3
>AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C
protein.
Length = 149
Score = 22.6 bits (46), Expect = 1.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 123 GMCKDGFAGD 152
GMCK+G +GD
Sbjct: 130 GMCKEGISGD 139
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 22.2 bits (45), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 73 QDVRRRSCRVGSTTMAPVCARTVSQEMMLLAP 168
+D+ + G TTM P A + +E+ LAP
Sbjct: 66 KDLYANTVLSGGTTMYPGIADRMQKEITALAP 97
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 4.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 177 LIVGRPRHQGVMVRYGTSMTLMYEMRHRAK 266
L++ RP+++ RY + LM +R + K
Sbjct: 357 LVMRRPQYKFETNRYSSGRVLMRTVRGKEK 386
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 4.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 177 LIVGRPRHQGVMVRYGTSMTLMYEMRHRAK 266
L++ RP+++ RY + LM +R + K
Sbjct: 357 LVMRRPQYKFETNRYSSGRVLMRTVRGKEK 386
>AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein.
Length = 126
Score = 20.6 bits (41), Expect = 4.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 188 KAPPSGRDGSLWDINDSY 241
KA +G DG+LW ++ +
Sbjct: 19 KAAIAGHDGNLWAKSEGF 36
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.6 bits (41), Expect = 4.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +3
Query: 162 RAVFPLIVGRPRHQGVMVRYGTSMTLMYEMRHRA 263
+A+F ++ +P H T ++ ++ RH A
Sbjct: 283 KAMFLVVTAQPVHSAYKAPEETIISSVFTTRHNA 316
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 20.6 bits (41), Expect = 4.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -1
Query: 160 GASSPAKPSLHIPEP-LSYYQPG---NFFVAHLELVF 62
G + PA+ +HIPE L Y +P ++ +A L ++F
Sbjct: 22 GWNVPAEELIHIPEHWLVYPEPNPSLHYLLALLYILF 58
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 20.2 bits (40), Expect = 6.3
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = +3
Query: 102 W*YDNGSGMCKDGFAGDDAPRAVFPLIVGRPRHQ 203
W +G CK G+ D + +G+ +H+
Sbjct: 240 WYLPSGGCHCKPGYQADVEKQECTECPIGKFKHE 273
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 20.2 bits (40), Expect = 6.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 160 GASSPAKPSLHIPEPLS 110
G+++PA P+L P L+
Sbjct: 22 GSTTPASPTLSTPPTLN 38
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 19.8 bits (39), Expect = 8.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 274 DTYFALCLISYIRVIDVP 221
DTYF SY+ I VP
Sbjct: 121 DTYFYNGKHSYVHTITVP 138
>DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 265 FALCLISYIRV 233
F LC++SY+ V
Sbjct: 9 FTLCIVSYMMV 19
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 19.8 bits (39), Expect = 8.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 228 MSHNEPSRPDGGAFPRSRGTRREEHHLLRNRPCT 127
+S + P R G PR T+ + HH RP T
Sbjct: 133 VSLSSPPREPGT--PRINFTKLKRHHPRYKRPRT 164
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 19.8 bits (39), Expect = 8.3
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +1
Query: 280 PQIPHLTRNLH 312
PQ+P+ +N H
Sbjct: 143 PQVPYTVKNFH 153
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,385
Number of Sequences: 438
Number of extensions: 1852
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6844365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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