Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1922
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   1.8  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   2.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   3.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.3  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   5.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.5  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 202 IRPVSS-DYSSFKMAPSPEYDKE 267
           I+P S  DY S K  PSP  D E
Sbjct: 157 IKPSSERDYFSVKKLPSPASDSE 179


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 418 TLDDGQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQDQPSM 549
           T +  +L++ + EA++  C K  E   +  +++L  +  ++P M
Sbjct: 52  TPEGKKLKSTIPEALSTDCAKCNEKVKANVRKVLHHLIDNKPDM 95


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = +1

Query: 322 LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEAI 462
           +++L++ ++ N DLK + S+G  +  + K+        LRA + +++
Sbjct: 80  MNHLMSLREKNPDLKIILSMGGWNEGSYKYSTVAKSAALRATMVQSV 126


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 262  KEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIG 384
            ++P      + C +S          T + TN D KP  S+G
Sbjct: 920  RQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKPGGSLG 960


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 310 DTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALL 450
           D   L N+   +  N DLK + SIG  +  N      +   +LRA L
Sbjct: 79  DLHGLENVANLKSVNPDLKVLISIGGWNAGNAILNGIVASSKLRASL 125


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/22 (22%), Positives = 12/22 (54%)
 Frame = +2

Query: 389 RTWRTINMSKPWTTVNFERSSM 454
           R W+T+   +PW  ++  +  +
Sbjct: 526 RPWQTVYNHRPWQQLHLNKKQI 547


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,528
Number of Sequences: 336
Number of extensions: 2557
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)