Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1922
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 0.84
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 3.4
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 3.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 4.5
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.0
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 7.9
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 7.9
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 7.9
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 0.84
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 196 KVIRPVSSDYSSFKMAPSPEYDKEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSD-LKPM 372
K PVS+ S F+ A +P +EP D S ++ H L + +TN + + +
Sbjct: 20 KAKNPVSTPNSHFRSASNPRKRREPPTIDTGYPDRSDTNSPTDHALHDENETNINVVVRV 79
Query: 373 NSIGNSDVENNKHVETLDDGQLRALL 450
+ +V +N + G + A L
Sbjct: 80 RGRTDQEVRDNSSLAVSTSGAMGAEL 105
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 208 PVSSDYSSFKMAPSPEYDKEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKP 369
P+S++ + A + Y K+ DKS ++SDDTKV H + + L P
Sbjct: 860 PISANPKALSFALT--YAKK-NLKDKSIYLLASDDTKVAHACLVSPEAMKKLTP 910
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 304 SDDTKVLHNLVTDQQTNSDLK-PMNSIGNSDVENNKHVETLDDGQLRA 444
+D+ + L + Q +SDL P+ + N+D+EN+ + DD + R+
Sbjct: 84 NDEWRNLMRRIGFSQVSSDLNTPLFPLNNTDMENDPFIVNGDDYRSRS 131
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 410 MSKPWTTVNFERSSMKPSRTNVPKIVRAKAVF 505
+ + W ++N S PS+ +PK V A A+F
Sbjct: 144 LQQEWLSLNQRYSDSWPSKITLPKWVHADALF 175
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +1
Query: 202 IRPVSSDYSSFKMAPSPEYDKEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSI 381
+ P + SS +PSP P+A S D L + SDL P +
Sbjct: 324 VAPSLASVSSVTKSPSPTPQSAPRAQSASTETAQDLDFLTPPRLSVNNPFLSDLYPASEQ 383
Query: 382 GNSDVE 399
G S E
Sbjct: 384 GLSSCE 389
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 179 LPRQSLSRKLAIKPIKPGHFEL 114
+P S +AIK I+ GHFEL
Sbjct: 134 IPLTSYDNAVAIKQIENGHFEL 155
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 325 HNLVTDQQTNSDLKPMNSIGNS-DVENNKHVETLDDGQLRALLDEAITYKCPKDREGKSS 501
H++ +D+ ++ K +N+ S +EN+ ET D +++ L PK E S
Sbjct: 28 HSIPSDELNSNSSKSLNNDRISRTIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQ 87
Query: 502 L 504
+
Sbjct: 88 I 88
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.9
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Frame = +1
Query: 244 PSPEYDKEP---KAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGN----SDVEN 402
P E DKEP KA D + H V D SDLKP N + + V+
Sbjct: 276 PFHENDKEPAELKAKDAFQLKGHHELDAPYHKKVFDTNQYSDLKPTNFMSQIHRLAKVQE 335
Query: 403 NKHVETLDDGQLRALLDEAITYKCPKD 483
K E G+ ++D KD
Sbjct: 336 RKEEEERKKGKDGQIVDAGFGLVLSKD 362
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 322 LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEAITYKCPKDREGKSS 501
++ + T QQ D+ +G +V + K+ + ++L+D ITY E + +
Sbjct: 46 MYLITTRQQVKKDI----GVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSE-RRT 100
Query: 502 LFKE 513
+FKE
Sbjct: 101 IFKE 104
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 LVTDQQTNSDLKPMNSIGNSDV 396
L+T + +N DLKP+ +G+ DV
Sbjct: 179 LITLEGSNKDLKPLVLMGHQDV 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,969
Number of Sequences: 5004
Number of extensions: 44763
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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