Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1922
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059...    29   2.6  
05_04_0361 - 20648383-20649942                                         29   3.5  
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335...    28   4.6  
04_04_1618 + 34822644-34822915,34823008-34823369,34824721-348247...    28   4.6  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   4.6  
05_03_0084 + 8266564-8266699,8267497-8267685,8267772-8267911,826...    28   6.1  

>04_04_1291 -
           32404716-32404946,32405377-32405478,32405731-32405910,
           32406023-32406100,32407501-32407620,32407713-32407805,
           32408369-32408443,32408673-32408828,32408957-32409040,
           32409773-32410450,32411814-32411877,32411968-32411978
          Length = 623

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = +1

Query: 223 YSSFKMAPSPEYDKEPKAPDKSATCV--SSDDTKVLHN-------LVTDQQTNSDLKPMN 375
           YS  K     +Y+KE KAP   ++C+  SS+  K L         ++ + Q N++ K  +
Sbjct: 323 YSEEKRKLKEKYEKELKAPGLGSSCMLKSSNSGKELKKEKLKSAAVIKELQENAEQKLRD 382

Query: 376 SIGNSDVENNKHVE 417
            +   D E ++ VE
Sbjct: 383 ELQQKDEETSQQVE 396


>05_04_0361 - 20648383-20649942
          Length = 519

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 442 ALLDEAITYKCPKDREGKSSLFKELLEE 525
           A++  A++ +  ++ EG+S LF+EL+EE
Sbjct: 187 AVICRAVSGRLSREDEGRSELFRELIEE 214


>09_02_0566 +
           10732359-10732497,10733114-10733267,10733448-10733519,
           10733701-10733769,10734430-10734501,10734590-10734661,
           10734769-10734840,10734928-10734999,10735121-10735192,
           10735293-10735364,10735435-10735506,10735826-10735897,
           10736039-10736104,10736638-10736676,10736787-10736845,
           10737166-10737545,10737629-10737824,10738012-10738179,
           10738618-10738736,10738873-10739083,10739163-10739403,
           10739830-10739980,10740469-10740828
          Length = 999

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/73 (20%), Positives = 34/73 (46%)
 Frame = -2

Query: 260 SYSGEGAILKEE*SDDTGLMTFHTKITLPRQSLSRKLAIKPIKPGHFELQFYSQHKVLDI 81
           ++S  G  +    +DD+ + T  +K+T+P   L  K  + P+   ++ L  ++    + +
Sbjct: 433 AFSSTGNFMDNNINDDSYIATSASKLTVPNSELYAKARLSPLSLTYYGLCMHNGSYTVKL 492

Query: 80  CNH*TSFSTDSKF 42
                 F+ DS +
Sbjct: 493 HFAEIVFTNDSTY 505


>04_04_1618 +
           34822644-34822915,34823008-34823369,34824721-34824796,
           34824887-34824980,34825086-34825223
          Length = 313

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 436 VDRRPRFRHVYCSPR 392
           VD  PRF+HV CSP+
Sbjct: 187 VDASPRFKHVICSPQ 201


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 250  PEYDKEPKAPDKSATCVSS-DDTKVLHNLVTDQQTNSDLK 366
            P+Y +  ++   S TC+SS +DTK+ +N      T  D K
Sbjct: 4825 PKYFRSSESNSSSRTCISSYNDTKMEYNFTDMTVTKKDKK 4864


>05_03_0084 +
           8266564-8266699,8267497-8267685,8267772-8267911,
           8268130-8268225,8268327-8268388,8268559-8268634,
           8268709-8268785,8268866-8268899,8268983-8269132,
           8269222-8269356,8269450-8269533
          Length = 392

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 155 KLAIKPIK-PGHFELQFYSQHKVLDICN 75
           K  +KP + P +  L FY+Q+K  D+CN
Sbjct: 310 KFILKPTENPWNSTLSFYTQYKPSDLCN 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,326
Number of Sequences: 37544
Number of extensions: 292052
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)