Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1922
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF267851-1|AAF78952.1| 222|Homo sapiens nuclear protein double ... 30 5.0
U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein. 30 6.7
L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein. 30 6.7
BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,... 30 6.7
AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,... 30 6.7
AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein. 30 6.7
Y08999-1|CAA70203.1| 370|Homo sapiens Sop2p-like protein protein. 29 8.8
BC054027-1|AAH54027.1| 370|Homo sapiens actin related protein 2... 29 8.8
BC047889-1|AAH47889.2| 370|Homo sapiens actin related protein 2... 29 8.8
BC039594-1|AAH39594.2| 370|Homo sapiens actin related protein 2... 29 8.8
BC037293-1|AAH37293.1| 430|Homo sapiens chromosome 3 open readi... 29 8.8
AB209059-1|BAD92296.1| 401|Homo sapiens actin related protein 2... 29 8.8
>AF267851-1|AAF78952.1| 222|Homo sapiens nuclear protein double
minute 1 protein.
Length = 222
Score = 30.3 bits (65), Expect = 5.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 226 SSFKMAPSPEYDKEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDVENN 405
S+ +P PE + PK+ + V+ + L ++T S + G SDVENN
Sbjct: 78 SNVVASPEPEAPETPKSQEAEQKDVTQERVHSLEASRVPKRTRSHSADSRAEGASDVENN 137
Query: 406 KHV 414
+ V
Sbjct: 138 EGV 140
>U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein.
Length = 677
Score = 29.9 bits (64), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 164 LSRKLAIKPIKPGHFELQFYSQHKVLDICNH*TSFSTDSKF*V*PTFSKMTAD 6
+SR+L ++P H+ L+ ++ V IC H ++ + + + + TF+K D
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 365
>L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein.
Length = 677
Score = 29.9 bits (64), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 164 LSRKLAIKPIKPGHFELQFYSQHKVLDICNH*TSFSTDSKF*V*PTFSKMTAD 6
+SR+L ++P H+ L+ ++ V IC H ++ + + + + TF+K D
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 365
>BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 29.9 bits (64), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 164 LSRKLAIKPIKPGHFELQFYSQHKVLDICNH*TSFSTDSKF*V*PTFSKMTAD 6
+SR+L ++P H+ L+ ++ V IC H ++ + + + + TF+K D
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 365
>AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 29.9 bits (64), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 164 LSRKLAIKPIKPGHFELQFYSQHKVLDICNH*TSFSTDSKF*V*PTFSKMTAD 6
+SR+L ++P H+ L+ ++ V IC H ++ + + + + TF+K D
Sbjct: 313 VSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 365
>AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein.
Length = 1265
Score = 29.9 bits (64), Expect = 6.7
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +1
Query: 232 FKMAPSPEYDKEPKAPDKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDV-ENNK 408
F P D E + +K C ++ +K L ++ + +T L ++ G + ENN+
Sbjct: 156 FARVPLTSNDDEDEDKEKMQ-CDNNIKSKTLPDIPSSGRTTQPLSTQDNSGVLFLKENNQ 214
Query: 409 HVETLDDGQ-LRALLD-EAITYKCPKDREGKSSLFKEL 516
HV LDD + + +++D D+ K+SL E+
Sbjct: 215 HVYGLDDSEHISSIVDVPPRESHSHSDQSSKTSLMSEM 252
>Y08999-1|CAA70203.1| 370|Homo sapiens Sop2p-like protein protein.
Length = 370
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 218 DDTGLMTFHTKITLPRQSLSRKLA 147
DD G +TF +K+ +P+QS+ R ++
Sbjct: 275 DDRGCLTFVSKLDIPKQSIQRNMS 298
>BC054027-1|AAH54027.1| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 218 DDTGLMTFHTKITLPRQSLSRKLA 147
DD G +TF +K+ +P+QS+ R ++
Sbjct: 275 DDRGCLTFVSKLDIPKQSIQRNMS 298
>BC047889-1|AAH47889.2| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 218 DDTGLMTFHTKITLPRQSLSRKLA 147
DD G +TF +K+ +P+QS+ R ++
Sbjct: 275 DDRGCLTFVSKLDIPKQSIQRNMS 298
>BC039594-1|AAH39594.2| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 218 DDTGLMTFHTKITLPRQSLSRKLA 147
DD G +TF +K+ +P+QS+ R ++
Sbjct: 275 DDRGCLTFVSKLDIPKQSIQRNMS 298
>BC037293-1|AAH37293.1| 430|Homo sapiens chromosome 3 open reading
frame 58 protein.
Length = 430
Score = 29.5 bits (63), Expect = 8.8
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 415 ETLDDGQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQ 534
E DG+L ALLDE PK R G+ KEL E + Q
Sbjct: 388 EIAKDGRLEALLDECAN---PKKRYGRFQAAKELREYLAQ 424
>AB209059-1|BAD92296.1| 401|Homo sapiens actin related protein 2/3
complex subunit 1A variant protein.
Length = 401
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 218 DDTGLMTFHTKITLPRQSLSRKLA 147
DD G +TF +K+ +P+QS+ R ++
Sbjct: 306 DDRGCLTFVSKLDIPKQSIQRNMS 329
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,903,703
Number of Sequences: 237096
Number of extensions: 1536025
Number of successful extensions: 3541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3541
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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