Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1919
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.8  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   7.7  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 404  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 544
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 377 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV--IGMPTCSIEQAEA 550
           +K+T+ H T   ++  V   EHNL   ++Q+   +    D  +    +G    ++ +A+ 
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKN 193

Query: 551 VRQYYAAFPALKKGQESPLQYYL 619
            + +   + +  K     +Q  L
Sbjct: 194 KKHWLGVYQSFGKASVDQIQKQL 216


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 524 TCSIEQAEAVRQYYAAFPALKKGQESPLQYY 616
           TC++ Q    R +   + ++K+G  + +QYY
Sbjct: 129 TCNVPQRRLNRFFQTLYISMKRGGRAVMQYY 159


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 491 LCPGD*YTADQQCFLNCV 438
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,788
Number of Sequences: 5004
Number of extensions: 59654
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)