Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1917
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 358 e-100
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 356 1e-99
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 197 1e-51
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 144 1e-35
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.021
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 1.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 358 bits (880), Expect = e-100
Identities = 157/215 (73%), Positives = 188/215 (87%)
Frame = +2
Query: 2 KHVPRAVFVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 181
K VPR+++VDLEP V+D+ RTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL
Sbjct: 64 KFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 361
+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPAPQVST
Sbjct: 124 ERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVST 183
Query: 362 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 541
+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSIT
Sbjct: 184 SVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSIT 243
Query: 542 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 646
ASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P
Sbjct: 244 ASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSP 278
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 356 bits (876), Expect = 1e-99
Identities = 158/215 (73%), Positives = 188/215 (87%)
Frame = +2
Query: 2 KHVPRAVFVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 181
K+VPR+++VDLEP V+D+ RTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V
Sbjct: 60 KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 361
D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPAPQVST
Sbjct: 120 DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVST 179
Query: 362 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 541
+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSIT
Sbjct: 180 SVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSIT 239
Query: 542 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 646
ASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP
Sbjct: 240 ASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAP 274
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 197 bits (480), Expect = 1e-51
Identities = 90/215 (41%), Positives = 133/215 (61%)
Frame = +2
Query: 2 KHVPRAVFVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 181
K+VPRAV VDLEP +D ++G + LF P+ +I G+ A N +A+GHYT G E+ D VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 361
D +R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP+ S
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSD 177
Query: 362 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 541
VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 178 TVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVT 237
Query: 542 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 646
S RF G LN DL + N+VP+PR+HF +V +AP
Sbjct: 238 TSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAP 272
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 144 bits (348), Expect = 1e-35
Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 3/218 (1%)
Frame = +2
Query: 2 KHVPRAVFVDLEPTVVDEARTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDL 175
+++PRA+ +DLEP VV+ + TY L++PE ++ K A NN+A G Y+ + I +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 176 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ- 352
++D I + AD L+GF + H L+ERL+ Y KK ++++P Q
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 353 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 532
VS VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMS 237
Query: 533 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 646
+ T +LR+ G +N DL +L+P PR HF L +Y P
Sbjct: 238 ASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 607 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 446
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.8
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = -2
Query: 640 VRDQWEVDTGVRHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAA 461
V D VDT V + +A ES R++ D S Q + E T A
Sbjct: 454 VADDDAVDTSVTATDDFD-ASASSSNAYESYRNTYTDDMDSSSIYQTSLSNVKTEETTPA 512
Query: 460 DV---IDGFIV-----DHESTVRVLKGCVGGEDRVVGLDDGSGNLRRGVDG 332
+ +DG ++ +HE V+ G E ++ DDGSG +R +DG
Sbjct: 513 EPASKVDGVVLYDFTGEHEG---VITASEGQEFTLLEPDDGSGWVRVKIDG 560
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 84 NNCLYVPVRASSTTVGSRSTKTARGT 7
N+ +Y PV +SSTT S ST + T
Sbjct: 740 NDAVYYPVSSSSTTTTSTSTGSVTTT 765
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 601 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 428
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,608
Number of Sequences: 5004
Number of extensions: 51978
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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