Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1916
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    39   0.086
UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme...    35   1.4  

>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 39.1 bits (87), Expect = 0.086
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 475 YRFMFRHIFAYILVNIFLFAY*VY*YKYKH-SLLTHFFGNVFFLIYIRVHYYI 630
           Y FM+  IF YI + I+++ Y VY Y Y +  + T+ +  +F  IYI ++ Y+
Sbjct: 10  YMFMYIFIFIYIFIYIYIYVY-VYIYLYIYFYIFTYIYLYIFIYIYICLYIYL 61



 Score = 33.1 bits (72), Expect = 5.7
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +1

Query: 481 FMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFGNVFFLIYIRVHYYI 630
           +++ ++F YI + I++F Y +Y Y Y +  L  +F  +F  IY+ +  YI
Sbjct: 6   YVYIYMFMYIFIFIYIFIY-IYIYVYVYIYLYIYF-YIFTYIYLYIFIYI 53


>UniRef50_Q09F58 Cluster: Heme maturase; n=4; Alveolata|Rep: Heme
           maturase - Tetrahymena paravorax
          Length = 514

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 475 YRFMFRHIFA-YILVNIFLFAY*VY*YKYKHSLLTHFFGNVFFLIYIRVHYYI 630
           Y F++  IF  +I++NIFL+ Y  Y +KYK  L  + F  +  +I+    Y I
Sbjct: 351 YLFIYYFIFNDFIIINIFLYLYRYYIFKYK-LLHIYIFNFIIIIIFFYFSYKI 402


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,122,395
Number of Sequences: 1657284
Number of extensions: 9844575
Number of successful extensions: 18406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18349
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)