Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1916
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   0.97 
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    26   5.2  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    25   6.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.0  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.0  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 122 IYKAYHKSLFERG-HHCKFFYPLLNW 196
           I K Y  + FE G H   FFYP  NW
Sbjct: 35  ISKPYFSTFFEGGIHSLLFFYPKRNW 60


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 598 KKHSQKNGSIMNAYIYI-NILNMRKEIYLLEC 506
           KKH   +  +++ ++ + +ILN  KE+ +L C
Sbjct: 292 KKHRDIDSEVLDDFVVLLDILNGNKEVIMLSC 323


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 175 KLTMMAAFEKALVVRFINKFEAFNYTSSA 89
           K+  ++AFE A + R INK+   ++ S A
Sbjct: 155 KMLPLSAFEHAYIQRLINKYGTEDFESMA 183


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 556 YKHSLLTH-FFGNVFFLIYIRVHYYI 630
           Y H  L+  FFG   F+IY  + YY+
Sbjct: 140 YAHVFLSWLFFGFTIFIIYRELRYYV 165


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 379  FMLQYFTTVWYKRFSNLALKTPL 447
            + L+Y    W+K F NL++  PL
Sbjct: 4043 YSLKYDYDFWFKYFENLSIPKPL 4065


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 574 SIMNAYIYINILNMRKEIYLLECKQ 500
           +I+N+ + + ILN R + YLL CK+
Sbjct: 37  AILNSELGLAILNDRIKDYLLTCKE 61


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 559 KHSLLTHFFGNVFFLI 606
           ++S+LTHF+GN   +I
Sbjct: 282 RYSILTHFYGNALSII 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,916
Number of Sequences: 5004
Number of extensions: 47281
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)