Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1916
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0019 - 10656005-10657511,10657712-10658739                       30   1.3  
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    29   3.0  
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216...    29   4.0  
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397     28   7.0  

>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 16  YNFKHYIYTQKLG-ISNVVVIVLILRQNLYN*KLQTYL*SV 135
           Y FK + Y      +S++ +I+L++  NLY   +Q+Y  SV
Sbjct: 545 YRFKAFFYCNTTSFMSSIALIILLVNPNLYRPAIQSYALSV 585


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 379 ITKDLGEFYHDSSRNGLLDFERLTIFTHR 293
           I  D   F+HD++RNG +  +R   F+ R
Sbjct: 402 IATDRSNFFHDTARNGTVSIDRWPFFSCR 430


>12_02_0498 +
           19721038-19721178,19721376-19721472,19721576-19721619,
           19722120-19722203,19722441-19722662
          Length = 195

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 47  SSEYQTSSLLCLF*GRTC-IIKSFKLIYKAYHKSLFERGHHCKFFYPLLNWANG*KTFAS 223
           ++ +Q ++  C+   +T  ++       + YHK+ F R HHCK    L N+ +       
Sbjct: 2   ATSFQGTTTKCMACDKTVYLVDKLTADNRVYHKACF-RCHHCKGTLKLANYNSFEGVLYC 60

Query: 224 RDHF 235
           R HF
Sbjct: 61  RPHF 64


>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
          Length = 851

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1   LFF-FYYNFKHYIYTQKLG-ISNVVVIVLILRQNLYN*KLQTYL*SV 135
           LF+ F   +K ++Y   +  +S++ +I+L++  NLY   +Q+Y  SV
Sbjct: 573 LFYNFPRRYKAFLYCNSVSFMSSLSLIILLVNPNLYRPAIQSYALSV 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,004
Number of Sequences: 37544
Number of extensions: 235474
Number of successful extensions: 375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)