Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1916
         (631 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    39   0.013

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 39.1 bits (87), Expect = 0.013
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 475 YRFMFRHIFAYILVNIFLFAY*VY*YKYKH-SLLTHFFGNVFFLIYIRVHYYI 630
           Y FM+  IF YI + I+++ Y VY Y Y +  + T+ +  +F  IYI ++ Y+
Sbjct: 10  YMFMYIFIFIYIFIYIYIYVY-VYIYLYIYFYIFTYIYLYIFIYIYICLYIYL 61



 Score = 33.1 bits (72), Expect = 0.83
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +1

Query: 481 FMFRHIFAYILVNIFLFAY*VY*YKYKHSLLTHFFGNVFFLIYIRVHYYI 630
           +++ ++F YI + I++F Y +Y Y Y +  L  +F  +F  IY+ +  YI
Sbjct: 6   YVYIYMFMYIFIFIYIFIY-IYIYVYVYIYLYIYF-YIFTYIYLYIFIYI 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,643,226
Number of Sequences: 237096
Number of extensions: 1509516
Number of successful extensions: 1805
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)