Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1914
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   2.7  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.5  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   4.7  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   4.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 280 KKLAGSKEELPSWMKSKLPG 339
           K L+ +K+E+P W+ SK  G
Sbjct: 527 KILSQAKQEIPEWLGSKSYG 546


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 306 FFLGASQFLFFDSLHTIRVKLKW 238
           + +   Q++ FD   +IR K+KW
Sbjct: 393 YAVNGDQWIGFDDEKSIRNKMKW 415


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 97  FFSIVCMYQCLCICNFLNFDA 35
           ++ I+ M  CLC   F+N  A
Sbjct: 211 YYHILAMLNCLCSLWFINCTA 231


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 97  FFSIVCMYQCLCICNFLNFDA 35
           ++ I+ M  CLC   F+N  A
Sbjct: 211 YYHILAMLNCLCSLWFINCTA 231


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 465 IIGNLLPRNHFVDHHDCIFR 406
           II ++LP+ H   HH  +F+
Sbjct: 6   IIDSMLPKYHQQFHHQQLFQ 25


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 465 IIGNLLPRNHFVDHHDCIFR 406
           II ++LP+ H   HH  +F+
Sbjct: 6   IIDSMLPKYHQQFHHQQLFQ 25


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 366 SPQTEPAPKATP 401
           SPQ  P+P +TP
Sbjct: 70  SPQGAPSPSSTP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,492
Number of Sequences: 336
Number of extensions: 2879
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)