Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1914
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 27 1.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 1.6
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 27 2.1
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.7
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 3.6
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 6.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 6.3
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 25 8.4
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 8.4
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/54 (20%), Positives = 25/54 (46%)
Frame = +1
Query: 226 QNNAPFEFDTNGMEGIEEKKLAGSKEELPSWMKSKLPGVKKVTNKERRRKQNQH 387
+ N + + G EE+ + ++ W++ PGV V ++ +++N H
Sbjct: 211 EGNMKDSLTLSDLRGDEEEAESSRYDQFGEWLEDNYPGVSDVEIYKKMKEENIH 264
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 79 CILLKKNHTYLVMAFLQHKGRAANHFN----LEMDSAVSDEPRDVAED 210
C+ L+K +A L +GR N FN L++D D P+++ D
Sbjct: 24 CLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILID 71
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 295 SKEELPSWMKSKLPGVKKVTN-KERRRKQNQHLRRLL-----TPKNAVMVINEMIPREQI 456
+KE+L S ++++ VKK+ N E ++ NQ + L T +A + NE++ +E +
Sbjct: 1273 NKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENL 1332
Query: 457 ANNFKVE 477
E
Sbjct: 1333 IEELNQE 1339
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 262 MEGIEEKKLAG-SKEELPSWMKSKLPGVKKVTNKERRRKQNQHLR 393
+E E KKLA +K + +W K K K+ T +E+R+ + + L+
Sbjct: 500 VEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEFLK 544
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 80 AYY*KKITHISLWRFYNTRVGPP 148
AYY + +TH SLW Y R P
Sbjct: 147 AYYWRSLTHDSLWYGYTNRPSIP 169
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 37 HRSSGNCRYTNIDTCILLKKNHTYLVMAFLQHKGRAANH 153
HR+ G+ N L++N YL++ +L +G +ANH
Sbjct: 39 HRTHGHYCLLNFS----LRENKNYLIIVYLPIEGFSANH 73
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 298 KEELPSWMKSKLPGVKKVTNKERRRKQ 378
K +LP+ + K+ KK +ERRRKQ
Sbjct: 278 KRQLPAAEREKVEKAKKRQAEERRRKQ 304
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 103 TYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVG 225
T +V++ +KG F E++ ++S P D AC+G
Sbjct: 100 TKVVVSCKSNKGSIGPRFVRELEGSLSSYPTDTLGILACLG 140
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 82 ILLKKNHTYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVG----QNNAPFEF 249
I + ++ ++ ++L H + +N+F L A +D ++ C+G NNA
Sbjct: 291 ININESTNHVDSSYLPHPIQLSNYFTLPSSCAQADAACQCGDNCECLGCLTHPNNATTLA 350
Query: 250 DTNGMEGIEEKKLA 291
N + +E++ ++
Sbjct: 351 ALNHISALEKETIS 364
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 346 KVTNKERRRKQNQHLRRLLTPKNAVMVINEMIPREQIANNFKVEPKPEQ 492
K TN+ + +++ R + TPKNAV + E + + ++N V+ E+
Sbjct: 27 KKTNRNQSKEKPVSSRSVETPKNAVCL--EPVGTDPVSNVATVDASKEE 73
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 267 GNRRKEIGWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPKATPHA 407
G+ + E W A DE+ ++ + K+ QTE + +TP A
Sbjct: 1175 GSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQTEFSETSTPQA 1221
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 146 AARPLCCKNAITRYV*FFFNSMHVSMFVYLQFPELRCRY 30
A PL N + + + FF + MF+YL F L ++
Sbjct: 19 AVYPLARDNIVRQSISLFFLTWFGGMFLYLTFASLSYQF 57
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 24.6 bits (51), Expect = 8.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Frame = -3
Query: 301 PWSQPISFLRFPPYHSCQTQMVHCFV 224
P+S P+SF +H + ++C +
Sbjct: 411 PFSSPLSFFMSSDFHKYMAEQINCLL 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,340
Number of Sequences: 5004
Number of extensions: 46786
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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