Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1914
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0330 - 2591652-2592485 29 2.7
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 28 3.6
11_04_0216 - 14954047-14956098 28 4.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 4.8
06_03_1405 - 29938558-29938676,29939045-29939819 28 4.8
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 28 4.8
12_01_0394 - 3105306-3106596,3107815-3107861 27 6.3
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 6.3
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 27 6.3
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 27 8.4
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 27 8.4
>05_01_0330 - 2591652-2592485
Length = 277
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 462 IGNLLPRNHFVDHHDCIFRREESP 391
IG+L N DH++C FR++++P
Sbjct: 99 IGDLYDINIICDHYECSFRKDKTP 122
>06_02_0200 -
12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -2
Query: 497 SACSGLGSTLKLLAICSLGIISLITMTAFFGVRSRLRCWFCLRRRSL 357
S C S LLA C+ G++SL + +A + LR CLRRRSL
Sbjct: 66 SLCPLPSSPPCLLASCAAGVLSLFSSSA--SASASLR---CLRRRSL 107
>11_04_0216 - 14954047-14956098
Length = 683
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 382 GSVC--GDVPCLSLSSLPVVYFSSTKAVLPWSQ 290
G +C GD CL L P V F T+ LPW Q
Sbjct: 158 GELCDTGD-SCLILEHKPAVLFDHTELELPWHQ 189
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 97 NHTYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVGQNNAPFEFDTNGMEGIE 276
+H+ F+Q G + L D SDE D++ED +++ FE G ++
Sbjct: 1021 SHSSASKNFVQEDGGSTKRARLLPDQ--SDEYTDMSEDILASQKDDCCFEDLFEGAAHVK 1078
Query: 277 EKKLAGSKEELPSW 318
E L S+ E SW
Sbjct: 1079 ESPL-NSRTESESW 1091
>06_03_1405 - 29938558-29938676,29939045-29939819
Length = 297
Score = 27.9 bits (59), Expect = 4.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +1
Query: 151 HFNLEMDSAVSDEPRDVAEDAACVGQNNAPFEFDTNGMEGI----EEKK--LAGSKEELP 312
H + ++ SA SD P D AE A +NNA + + + E+KK A +EE+
Sbjct: 67 HVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTASLEEEVV 126
Query: 313 SWMKSKLPGVKKVTNKERRRKQNQHLRRLL 402
+KK+ N + LR LL
Sbjct: 127 HLRALNQQLMKKLQNHATLEAEVSRLRCLL 156
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 283 KLAGSKEELPSWM--KSKLPGVKKVTNKERRRKQNQHLRRLLTPKNAVMVINEMIPREQI 456
KL GS E+PSW+ KL V+ V K + + Q L L K +++N I +E +
Sbjct: 725 KLKGSLHEIPSWVGKLEKLVKVQLVFTKLKDTESIQVLGELPGLKCLRLILNAYIGKELV 784
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 253 TNGMEGIEEKKLAGSKEELPSWMKSKLPGVKKVTNKERR-RKQNQHLRRLLTPKNAVMVI 429
T E +E+ G ++ SW ++ ++ T +E R +++N+H R + KNA +
Sbjct: 148 TRREERRKEEATQGCRDH--SWKNARQVRTEQSTTREDRGKEKNRHDRHDHSRKNAHQIS 205
Query: 430 NEMIPREQIANNFKV 474
E R + + N KV
Sbjct: 206 REPSTRREESGNKKV 220
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.5 bits (58), Expect = 6.3
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Frame = +1
Query: 166 MDSAVSDEPRDVAEDAACVGQN---NAPFEFDTNGMEGIEEKKLAGSKEELPSWMKSKLP 336
+D ++ EP++ A+ +G P+ D + + K +K + +
Sbjct: 444 LDCLLAVEPQNRGTAASALGSEFFTTKPYACDPSSLPKYPPSKEYDAKLRDEEARRQRAA 503
Query: 337 GVKKVTNKERRRKQ------NQHLRRLLTPKNAVMVINEMIPREQIANNFKVEP 480
VK ++ RRKQ N L++ N N+ IP+E F ++P
Sbjct: 504 AVKGHESEAGRRKQLPAPNGNNELQQRRVQLNPKSSSNKFIPKEDAVTGFPIDP 557
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 91 KKNHTYLVMAFLQHKGRAANHFNLEM-DSAVSDEPRDVAEDAACVGQNNAPFEFDTNGM- 264
K NH +++F++ K N+ + +S +S +P + A G+ N P +G+
Sbjct: 252 KANHGSNILSFIR-KVLIGNNVQPNITESPISVKPVSIDHHAGVFGRKNGPAASGGDGVE 310
Query: 265 EGIEEKKLAG 294
EG EE + AG
Sbjct: 311 EGDEEVQAAG 320
>11_03_0146 + 10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 88 LKKNHTYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVGQNNAPFEFDTNGME 267
+K H Y A NH + +++ S + + + C+ Q P+EF+T+ +
Sbjct: 844 VKLRHNYDGGALSSVVWHILNHHSDPLNTIFSRDAQIEPDMMLCINQTYTPYEFETSWDQ 903
Query: 268 GIEEKKLAG 294
I+ L G
Sbjct: 904 FIKRYDLEG 912
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 340 VKKVTNKERRRKQNQHLRRLLTPKNAVMVINEMIPREQIANNFKVEPKP 486
VKKV + E + K+ + LRR L N ++ P + N V P P
Sbjct: 11 VKKVFSPESKEKKEERLRRKLAASNPNP--PDLTPSASLEVNVSVPPPP 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,005
Number of Sequences: 37544
Number of extensions: 323191
Number of successful extensions: 1079
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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