Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1914
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 267  GNRRKEIGWLQG 302
            G RRKE  WL+G
Sbjct: 991  GKRRKEPPWLEG 1002


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 465 IIGNLLPRNHFVDHHDCIF 409
           II ++LP+ H   HH  +F
Sbjct: 1   IIDSMLPKYHQQFHHQQLF 19


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 113 TRYV*FFFNSMHVSM 69
           TRY+ F F  +H +M
Sbjct: 298 TRYIDFLFQVLHCNM 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,292
Number of Sequences: 438
Number of extensions: 3292
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)