Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1913
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RBM6 Cluster: Predicted protein; n=1; Ajellomyces cap...    34   3.0  
UniRef50_Q4QBB2 Cluster: Putative uncharacterized protein; n=3; ...    34   3.9  
UniRef50_Q8AV59 Cluster: Mesendoderm nuclear factor; n=1; Xenopu...    33   5.2  
UniRef50_A5CBC1 Cluster: Putative uncharacterized protein; n=3; ...    33   9.0  

>UniRef50_A6RBM6 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 883

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 485 SQERRDESDESLYESADGHSDAI-SASDDAIPRLKTPRLARNLSSSPLRTKEIEVREERT 661
           S++R+D +D      + GHS+ + SAS D + R K+P    N      R++E   R+   
Sbjct: 75  SKQRQDAADIECDAESSGHSEILTSASTDQLHRPKSPSGMLNAKLQSQRSQEQPARQGLE 134

Query: 662 QEN-HVP 679
           +EN H P
Sbjct: 135 RENSHSP 141


>UniRef50_Q4QBB2 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 3340

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +2

Query: 458 YSDILDIRVSQERRDESD-ESLYESADGHSDAISASDDAIPRLKTPRLAR--NLSSSPLR 628
           Y D L   V++   D++  + L    DG+S AIS++  + PR KTPR  R  N  SS + 
Sbjct: 283 YGDTLVSEVTRTVDDDNGGDVLTPQKDGYSAAISSAPSSPPRSKTPRRQRPQNYRSSIIH 342

Query: 629 TKEIEVREERTQE 667
            +   V    +QE
Sbjct: 343 MEMAPVMASPSQE 355


>UniRef50_Q8AV59 Cluster: Mesendoderm nuclear factor; n=1; Xenopus
           laevis|Rep: Mesendoderm nuclear factor - Xenopus laevis
           (African clawed frog)
          Length = 756

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRM-LFLEVFPLTLPAKDFQLFLVLSF-HDTG 76
           +AS SRF Q+ Q+     +T      R+N    F +  P+T  A    L   L+F H+ G
Sbjct: 652 QASTSRFKQMPQQPLETESTVVSRDLRENAFERFKQARPVTHDANPPCLKAALAFSHEYG 711

Query: 75  QIFYDK*KK 49
           Q  YD+ +K
Sbjct: 712 QYCYDRWRK 720


>UniRef50_A5CBC1 Cluster: Putative uncharacterized protein; n=3;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 265

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 545 DAISASDDAIPRLKTPRLARNLSSSPLRTKEIEVREERTQ 664
           D + A  + I  L  PR   + S SPLRTK++ +R +R++
Sbjct: 149 DILEAHKNKIDMLNKPRSQPSSSKSPLRTKQVWLRNDRSK 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,609,602
Number of Sequences: 1657284
Number of extensions: 8053255
Number of successful extensions: 23152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23141
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)