Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1913
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    31   0.16 
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    27   2.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   3.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   4.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.6  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   6.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   8.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   8.0  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 663  CVLSSLTSISFVRNGELERFLANRGVLSLG 574
            C + SL + S +R+G+ ERF  N GV S+G
Sbjct: 1330 CTIESLFNESTLRSGKAERFSENAGVESIG 1359


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 172 SGQPNVIFRSFSFNTSRKRFSIIFSAILSRHG 77
           S +  V+++SF  N   KRF  IF A+++  G
Sbjct: 48  SNRNRVVYKSFQPNPRDKRFQWIFGALIAGGG 79


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 458 YSDILDIRVSQERRDESDESLYESADGHSDAISASDDAI 574
           Y D +   + +++R   +E L   A G  DA    +DA+
Sbjct: 56  YKDKILAEIEEQKRIREEEKLARRASGQVDAAMEEEDAV 94


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 503 ESDESLYESADGHSDAISASDDAIPRLKTPRLARNLSSSP 622
           ++  S+Y +    S   SAS     RL+ P  ARN SS P
Sbjct: 660 DNPSSIYFAKQTDSRQSSASKLLYARLQAPEHARNFSSPP 699


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 497 RDESDESLYESADGHSDAISASDDAIPRLKTPRLARN-LSSSPLRTKEIEVREERTQENH 673
           R+E   SL E A+ +S +  +   + PRL     +RN + S P  TK      E+ Q   
Sbjct: 442 RNEDFPSLAEVANQNSSSAPSVPVSAPRLSGKSASRNHVPSPPKGTKSPMASSEQAQHQQ 501

Query: 674 V 676
           V
Sbjct: 502 V 502


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 503 ESDESLYESADGHSDAISASDDAIPRLKTPRLARNLSSSPLRTKE 637
           ES++ L +  D   DA + +D  I  +KT ++A + S  PLR ++
Sbjct: 3   ESEQLLEKQQDHKWDAATHADKGIT-IKTGKIAVSSSDIPLRNRK 46


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 196 YYVCGTLISGQPNVIFRSFSFNTSRKRFSIIFSAILSRHGTNLL*Q 59
           Y V   L + Q N+IF  +S  + +  +SI+   IL    TNLL Q
Sbjct: 339 YAVTRILPAIQNNIIFLEYSRTSKQGMWSILSPCILIAVYTNLLLQ 384


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 458  YSDILDIRVS-----QERRDESDESLYESADGHSDAISASDD 568
            YSD  D+ +      Q+   ++D+S ++ A  H D IS  ++
Sbjct: 1893 YSDNDDMNIEFMVDEQDASSQNDDSSFDEASSHGDVISIDEE 1934


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 467 ILDIRVSQERRDESDESLYESADGHSDAISASDDAIPRL 583
           IL+ R+ + R D SDE L+ S+  + +  S+     PRL
Sbjct: 255 ILEQRLKRHRIDVSDEDLHPSSQLNDNEASSLFPDTPRL 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,181
Number of Sequences: 5004
Number of extensions: 35758
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)