Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1913
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0651 - 12649275-12649373,12649418-12650479                       31   1.2  
02_02_0643 + 12590928-12592172,12592609-12592698                       31   1.2  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    29   3.6  
07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835           29   4.8  
11_04_0036 + 12635480-12636422,12636674-12637164                       28   8.3  
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612...    28   8.3  

>02_02_0651 - 12649275-12649373,12649418-12650479
          Length = 386

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 268 NSLNTFRGKSKSFLSNHTASDARPYYVCGTLISGQPNVIF 149
           N   TF    ++ + ++T   A PYY    ++SG+PN++F
Sbjct: 130 NPDTTFINHIQAVILSYTPCQAHPYYAAA-IVSGKPNIMF 168


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 268 NSLNTFRGKSKSFLSNHTASDARPYYVCGTLISGQPNVIF 149
           N   TF    ++ + ++T   A PYY    ++SG+PN++F
Sbjct: 130 NPDTTFINHIQAVILSYTPCQAHPYYAAA-IVSGKPNIMF 168


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 476 IRVSQERRDESDESLYE---SADGHSDAISASDDAIPRLKTPRLARNLSSSPLRTKEIEV 646
           +RV  + R+ S ES+ +   S D    +    + A    + PRL+ ++  SPLR +EI+V
Sbjct: 231 LRVLAKLRNPS-ESVQQPRLSYDAPRFSCEGRESASKLREVPRLSLDIKESPLRNREIDV 289

Query: 647 R 649
           R
Sbjct: 290 R 290


>07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835
          Length = 231

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 461 SDILDIRVSQERRDESDESLY---ESADGHSDAISASDDAIPRLKTPRLARNLSSSPLRT 631
           SD  D     ER +E +E +    E+A+  ++  + S    P    P      SSSPLR 
Sbjct: 127 SDANDEEEEDERDEEEEEEVVVVEEAAEEDTEGKNYSPGYTPSPDHPETGVASSSSPLRQ 186

Query: 632 KEIE 643
           K++E
Sbjct: 187 KDLE 190


>11_04_0036 + 12635480-12636422,12636674-12637164
          Length = 477

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 547 CDIGQR*RHPEAQDPTISKESLKLAITDERNRSEGRKDTGKPCPY 681
           C++     HP    P   +E++ +   +   R +G +   +PCPY
Sbjct: 267 CEVRGSTGHPRNDCPETHEEAMYMGNNNNGYRPQGGQGWNQPCPY 311


>05_02_0052 +
           6124880-6124956,6125097-6125250,6125327-6125920,
           6126344-6126757,6126835-6126846
          Length = 416

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 458 YSDILDIRVSQ---ERRDESDESLYESADGHSDAISASDDAIPRLKTPRLARNLSSSPLR 628
           Y ++L  R+++   + R  S+     + DG  +     DD    + T R A +  SSP +
Sbjct: 288 YVNVLKARIAELEEKNRKLSESQQLHAGDGDGERDDGPDDDKIEVNTSRSAADQGSSPNK 347

Query: 629 TKEIEVR 649
            +E+ ++
Sbjct: 348 CQELHLK 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,287
Number of Sequences: 37544
Number of extensions: 217460
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)