Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1913
(705 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA... 31 2.0
AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA... 29 4.7
BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p pro... 29 6.2
X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein pr... 29 8.1
M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clo... 29 8.1
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo... 29 8.1
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo... 29 8.1
BT001889-1|AAN71663.1| 372|Drosophila melanogaster SD15211p pro... 29 8.1
AY052141-1|AAK93565.1| 437|Drosophila melanogaster SD09884p pro... 29 8.1
AL024485-7|CAA19677.1| 1156|Drosophila melanogaster EG:155E2.4,F... 29 8.1
AL024485-6|CAA19680.1| 1055|Drosophila melanogaster EG:155E2.4,F... 29 8.1
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F... 29 8.1
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F... 29 8.1
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock... 29 8.1
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ... 29 8.1
AE014296-3748|AAN12211.2| 372|Drosophila melanogaster CG11100-P... 29 8.1
AE014296-3746|AAF51886.1| 437|Drosophila melanogaster CG11100-P... 29 8.1
>AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA
protein.
Length = 463
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 482 VSQERRDESDESLY-ESADGHSDAISASDDAIPRLKTPRLARNLSSS 619
VS+ER+ E D L+ E S S DA+PR + R + + SSS
Sbjct: 39 VSRERKRERDRELHRERTSNRSSRRSREKDAVPRRRRTRSSPSRSSS 85
>AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA
protein.
Length = 1393
Score = 29.5 bits (63), Expect = 4.7
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 482 VSQERRDESDESLYESADGHSDAISASDDAIPRLKTPRLARNLSSSPLRTKEIEVREERT 661
+ + RD L E + A + R R AR L LR ++++V+E+R
Sbjct: 228 LKRRERDRMQRQLREQDRERQRTLLAEQHRLDRQSLKR-ARQLRDRRLREQQLKVKEQRD 286
Query: 662 QENHV 676
E H+
Sbjct: 287 HERHM 291
>BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p
protein.
Length = 328
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 482 VSQERRDESDESLY-ESADGHSDAISASDDAIPRLKTPRLARNLSSS 619
VS+ER+ E D L+ E S S DA+PR + R + + SSS
Sbjct: 57 VSRERKRERDRELHRERTSNRSLRRSREKDAVPRRRRTRSSPSRSSS 103
>X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein
protein.
Length = 1127
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 532 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 575
>M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clock
protein C protein.
Length = 1176
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
protein B protein.
Length = 1122
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
protein A protein.
Length = 1218
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>BT001889-1|AAN71663.1| 372|Drosophila melanogaster SD15211p
protein.
Length = 372
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 473 DIRVSQERRDESDESLYESADGHSDAISASDD 568
D+ +S++ R D+ + E +GH DA+ DD
Sbjct: 264 DVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDD 295
>AY052141-1|AAK93565.1| 437|Drosophila melanogaster SD09884p
protein.
Length = 437
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 473 DIRVSQERRDESDESLYESADGHSDAISASDD 568
D+ +S++ R D+ + E +GH DA+ DD
Sbjct: 329 DVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDD 360
>AL024485-7|CAA19677.1| 1156|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1156
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 532 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 575
>AL024485-6|CAA19680.1| 1055|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1055
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1116
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1212
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
protein protein.
Length = 1224
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
protein.
Length = 1218
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 249 EASPSRFFQITQRATRAPTTCAELSFRDNRMLFLEVFPLTLPAK 118
E SP + ++ +T P + +L++ +N + F P+T PA+
Sbjct: 594 EISPHHDYYDSKSSTETPPSYNQLNYNENLLRFFNSKPVTAPAE 637
>AE014296-3748|AAN12211.2| 372|Drosophila melanogaster CG11100-PC,
isoform C protein.
Length = 372
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 473 DIRVSQERRDESDESLYESADGHSDAISASDD 568
D+ +S++ R D+ + E +GH DA+ DD
Sbjct: 264 DVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDD 295
>AE014296-3746|AAF51886.1| 437|Drosophila melanogaster CG11100-PB,
isoform B protein.
Length = 437
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 473 DIRVSQERRDESDESLYESADGHSDAISASDD 568
D+ +S++ R D+ + E +GH DA+ DD
Sbjct: 329 DVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDD 360
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,980,135
Number of Sequences: 53049
Number of extensions: 369528
Number of successful extensions: 1131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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