Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1912
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   3.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.5  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 105 CSLTSV*WCSRFKRDFCNNNLVLNLYSQRKAIVSDSV 215
           C+LT   +  RF  D+  + L ++ + Q+K  ++DS+
Sbjct: 8   CTLTLKFFIDRFHTDYRLSKLAISFFDQKKNKMADSI 44


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 692 RPPASLTAREPVDWVLWT 639
           RP  S+T   P+DW+L+T
Sbjct: 495 RPDISITGPIPIDWMLYT 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,274
Number of Sequences: 5004
Number of extensions: 53718
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)