Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1912
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0611 + 25461469-25461655,25461670-25462238                       30   2.0  
04_04_1659 - 35127145-35127204,35127324-35127464,35127597-351276...    28   6.2  
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973...    28   8.2  
03_01_0632 - 4647271-4648704                                           28   8.2  
02_05_1344 + 35823588-35824643                                         28   8.2  

>11_06_0611 + 25461469-25461655,25461670-25462238
          Length = 251

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 471 EGRAPPPSTGTQRNGTYTGSSGTPTRELRIRQPTYRE 581
           +G APPP  G +R   YT  +G   REL       RE
Sbjct: 191 DGMAPPPLPGRRRRRCYTHRNGERERELERNGERERE 227


>04_04_1659 -
           35127145-35127204,35127324-35127464,35127597-35127647,
           35127757-35127837,35128229-35128324,35128393-35128568,
           35130088-35130176,35130255-35130362,35130673-35130809,
           35131023-35131073,35131264-35131310,35131477-35131544,
           35132161-35132262,35132556-35132735,35132821-35133059
          Length = 541

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -3

Query: 290 FGCVEPHHDAGTITASRLPYQWY*INGIRHDRFPLRIQV*N------EIVVTKIPFKS*T 129
           FG        G +TA    Y+W     I H  +  +  V +      E+V TKIP+++ T
Sbjct: 406 FGVSRLRSQGGEMTAETGTYRWMAPEVINHKPYDHKADVFSFAIVLWELVTTKIPYENLT 465

Query: 128 PL 123
           PL
Sbjct: 466 PL 467


>03_05_0787 +
           27696347-27696708,27696851-27696857,27697066-27697371,
           27697454-27697873
          Length = 364

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 568 GCLIRSSLVGVPDDPVYVPFLCVPVEGGGALPSKALSLLRASARVDRRQSSSSACL 401
           GC     L G+PD    VPF C P +    +P    S  +    ++ +   +S+CL
Sbjct: 39  GCAAGQVLKGLPDLGHDVPFRCRPEDSADRIPLLLGSKRQWLRHLEVQAKEASSCL 94


>03_01_0632 - 4647271-4648704
          Length = 477

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 330 ANEMLEGEGAGLAARVAELE--VRCARQAEELLCLRSTLADALRRLNALEGRAPPPSTGT 503
           A E   GE A L   + + +  ++C +Q  EL CLR T A A   +  L+      S+  
Sbjct: 307 ALEEARGENAALKEMLGDKDTAIKCTKQ--ELECLRVTEAAARDSVKELQSLLVATSSSP 364

Query: 504 QRNGTYTGSSGTPT 545
              G    +S +PT
Sbjct: 365 TAAGMKLSASPSPT 378


>02_05_1344 + 35823588-35824643
          Length = 351

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 369 ARVAELEVRCARQAEELLCLRSTLADALRRLNALEGR 479
           A VA LE       E L  +   L D  RRL ALE R
Sbjct: 222 AHVARLEEENLTLKERLFLMEQELGDMRRRLEALESR 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,181,503
Number of Sequences: 37544
Number of extensions: 389183
Number of successful extensions: 1247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)