Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1912
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 333 NEMLEGEGAGLAARVAELEVRCARQAEELLCLRSTLADALRRLNALE 473
           +E++  E   L  RV ELE     Q  E+L L+S+  + LRRL  LE
Sbjct: 28  DELILNENDRLKFRVDELEKIVVAQRNEILLLQSSTVEILRRLQNLE 74


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 452 EETQRFRRQSSTTLHGYTEKRNVY 523
           EET   RR  +TT  GYT+KR ++
Sbjct: 486 EETTTTRRWPTTTTSGYTKKRRIF 509


>AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.1 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 456 RLNALEGRAPPPSTGTQRNGTYTGSSGTP 542
           R+  L    PP S+GT RN    G SG P
Sbjct: 55  RIPGLCEHCPPASSGTARNHRKVGESGDP 83


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
            protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 333  NEMLEGEGAGLAARVAELEVRCARQAEELLCLRSTLADALRRLNALEGRAP-PPSTGTQR 509
            NE  +G   G       ++      AE      S +     R N + G AP PP+ G+  
Sbjct: 825  NETADGNATGDGNEFGTVQTGAKHNAESSA---SGIPLVQARSNTVNGGAPVPPAPGSGA 881

Query: 510  NGTYTGSSGT 539
             G+ T  SGT
Sbjct: 882  TGSGTSGSGT 891


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
            protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 333  NEMLEGEGAGLAARVAELEVRCARQAEELLCLRSTLADALRRLNALEGRAP-PPSTGTQR 509
            NE  +G   G       ++      AE      S +     R N + G AP PP+ G+  
Sbjct: 825  NETADGNATGDGNEFGTVQTGAKHNAESSA---SGIPLVQARSNTVNGGAPVPPAPGSGA 881

Query: 510  NGTYTGSSGT 539
             G+ T  SGT
Sbjct: 882  TGSGTSGSGT 891


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 400 PDRLKNYSAYGPPSLML*GDSTL*KAELHHPPRVHRETERIQDHQEHQQENSG*DNRRIV 579
           P + KN    GPP+L+    ST+   E+      H  T   Q+ Q HQ+ N    + ++ 
Sbjct: 146 PAKFKNLGVVGPPTLI---SSTVSLHEI--SGFTHNPTSGHQNEQTHQKTNGSAVHNQLT 200

Query: 580 RQLKG--LPVMGP 612
           R +    L  +GP
Sbjct: 201 RNIMNEVLTKVGP 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,780,515
Number of Sequences: 27780
Number of extensions: 315569
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)