Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1911
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.57 
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   2.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   5.3  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.2  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +3

Query: 360 YNQPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGF 488
           + +P     P  NT    S   T T  S    S  GS PTTGF
Sbjct: 228 FGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGF 270


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -2

Query: 202 FTPPVLSSFINQATAEDEEVAHRPPD---DVKGSARPPKVVVVAHPLTIPQLSTSEVPGK 32
           FTP  L S       E E + HR  +    ++     P  V    PLT    S  EVPGK
Sbjct: 44  FTPQELQSLA--VNGESEYLQHRISEFLEQLRTENITPIFVFNGIPLTFEASSQLEVPGK 101

Query: 31  HKLSTVLDVF 2
            K  + L  F
Sbjct: 102 QKSHSALTDF 111


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
 Frame = +3

Query: 384 PPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQT--FTPT 557
           PPP  +N+ +      +  SA       +     +G  P PY      GG  Q   + P 
Sbjct: 62  PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPY---PPQGGYPQQPYYYPN 118

Query: 558 QQDYSNYAAGYAEHNVAQ 611
           Q +Y      YA+   AQ
Sbjct: 119 QPNYYPAQPAYAQPVYAQ 136


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 369  PYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTT-GFGTQPSPYAYSSYNGGLSQT 545
            PY     P  T+  SS  +       YG++     P++ G+ T P+    S      S +
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSP-----GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPS 1584

Query: 546  FTPTQQDYSNYAAGYA 593
            ++PT   YS  +  Y+
Sbjct: 1585 YSPTSPSYSPTSPSYS 1600


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 NDDSTGGVKSEVRSPGLCEADVALYGETLP 266
           +D  +   + ++  PG+ + D+  +GE LP
Sbjct: 322 SDGDSESSEDDLAQPGIMKPDITFFGEALP 351


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 354  GLYNQPYAAYPPPHNTN 404
            GL  QPY  +P P  TN
Sbjct: 954  GLMGQPYGGFPEPLRTN 970


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 396 NTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSP 506
           NT+N+S+  +T    SA   +G G+   TG   + SP
Sbjct: 172 NTSNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSSP 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,947
Number of Sequences: 5004
Number of extensions: 48034
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)