Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1911
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 35 0.063
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 1.8
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 30 1.8
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 30 1.8
01_07_0082 - 40965947-40967023 30 1.8
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 4.1
01_03_0005 + 11568545-11569119,11569179-11569191 29 4.1
10_08_0338 + 16916429-16916650,16916728-16917900 28 5.4
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 5.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 5.4
09_03_0006 + 11426346-11426420,11426733-11427452 28 7.2
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 28 7.2
06_01_0835 - 6315762-6316844 28 7.2
11_06_0610 - 25449085-25453284 27 9.5
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 27 9.5
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 27 9.5
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 27 9.5
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 27 9.5
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 9.5
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 27 9.5
02_01_0140 + 1014594-1016048 27 9.5
01_06_1682 - 39130696-39131705,39132355-39132583 27 9.5
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 363 NQPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGG-LS 539
NQ A P + S PT + Y G + P G+GT S Y S++NGG
Sbjct: 140 NQHSGAAHQPLTSFQNSESYVGPTSNTYYNAGGHQTAP--GYGTSNSYYQNSTWNGGSFE 197
Query: 540 QTFTPTQQDYSNYAAGYAEHNVA 608
+ + Q+Y + +H+++
Sbjct: 198 NNYAQSYQNYPSSNTNTVQHSIS 220
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +3
Query: 360 YNQPYAAYPPPHNTNNRSSCKATPTYLSA--YGMSGVGSVPTTGFGTQPSP-YAYSS--- 521
YN A Y P H + SS + +P ++ Y + PT+ +QPSP Y+ +S
Sbjct: 1746 YNPSSAKYSPSH-AYSPSSPRLSPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYT 1804
Query: 522 YNGGLSQTFTPTQQDYS 572
+GG S ++PT +YS
Sbjct: 1805 TSGGPSPDYSPTSPNYS 1821
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 492 TQPSPYAYSSYNGGLSQTFTPTQQDYSNYAAGYAEHNVAQYKWAITQ 632
T P+P A ++ N G SQ Q YSN A +N WA Q
Sbjct: 413 TPPTPEATTTMNQGGSQANDHPQPSYSNQGLAAASYNSYVAPWAQPQ 459
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +3
Query: 369 PYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPT-TGFGTQPSP---YAYSSYNG-G 533
P A P +++ +S ++ + SG G+ P TG+GTQP P Y+ SY
Sbjct: 576 PAAGSHPGYSSQPPTSAASSYPVQGSAPQSGYGAPPPQTGYGTQPQPQGGYSQGSYGAPP 635
Query: 534 LSQTFTPTQQDYSNY-AAGYAEHNVAQYKWAITQ 632
Q P Y G A QY ++ Q
Sbjct: 636 QGQKAPPNTSPYGQAPPPGSAPGGYGQYGYSQNQ 669
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/71 (26%), Positives = 24/71 (33%)
Frame = +3
Query: 366 QPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQT 545
+P AYP + + P YG P G+G P P + Y GG
Sbjct: 235 EPVTAYPAAAGPSTAAPYGTAPPPQYGYGYPAQPPPPQAGYGYPPPP-PQAGYGGGYGY- 292
Query: 546 FTPTQQDYSNY 578
P Q Y Y
Sbjct: 293 --PPQAGYGGY 301
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 444 AYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLS 539
A+G +G GS T GFG+ S + + + G+S
Sbjct: 290 AFGSTGFGSSTTPGFGSSGSTPGFGASSSGMS 321
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +3
Query: 363 NQPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYNGGLSQ 542
N Y PPP C P+Y S G G G T + + P PY S GG S
Sbjct: 51 NPSYYPPPPPPVVTPTPQCPPPPSYPSGGGGGGGGG--TVMYTSPPPPY---SGGGGGSS 105
Query: 543 T 545
T
Sbjct: 106 T 106
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 441 SAYGMSGVGSVPTTGFGTQ--PSPYAYSSYNGGLSQTFTPTQQDYSNYAAGY 590
+A G SG G+ +G G P+ +A S GG + + SNY +GY
Sbjct: 404 AAGGGSGYGAGYGSGNGGSGYPNAWADPSQGGGFGASVNGVSEGQSNYGSGY 455
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Frame = +3
Query: 360 YNQPYAAY---PPPHNTNNRSSCKATPTYLS----AYGMSGVGSVPTTGF--GTQPSPYA 512
Y+QPY Y PPP + P + S Y GS P G P P
Sbjct: 371 YSQPYGGYPQQPPPRGGMGWDQRQGPPPHASHHGGGYDYYKQGSQPYEGQPPNYPPGPGN 430
Query: 513 YSSYNGGLSQTFTPTQQDYS----NYAAGYAE 596
Y+SY + Q S NY GY +
Sbjct: 431 YNSYGPSQGPNYGQPQYPQSAPPQNYGPGYGD 462
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +3
Query: 360 YNQPYAAYPPPHNTNNRS----SCKATPTYLSAYGMSGVGSVPTTG-FGTQPSPYAYSSY 524
Y Q AY NN + A P Y +AY +G GS P +G G +P A
Sbjct: 585 YPQSQPAYGDQAAQNNANYGYQGAPADPNYGNAYPQAGYGSTPASGQAGYAAAPAAGQPG 644
Query: 525 NGGLSQTFTPT 557
G T PT
Sbjct: 645 YGQPGYTQPPT 655
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +3
Query: 387 PPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSY 524
PP T S P YG SG + P P PY Y+SY
Sbjct: 497 PPGVTPPSSGAPTQPVPAPVYGTSGAPNAPPM---YPPPPYGYASY 539
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 199 TPPVLSSFINQATAEDEEVAHRPPDDVKGSARPPKVVVVAHPLTIPQLSTS 47
+PPVL + + + P ++ RPP + H T P +STS
Sbjct: 105 SPPVLRLAVGHRCPDSSAPSPPQPGALRWHRRPPSTALPPHGETAPLVSTS 155
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 336 KPRCRYHTAAYYCSIGTAARSGRMVAFPRTAPRLPRKAP 220
K YH IG + RSG MVA+ R P P
Sbjct: 797 KDNSSYHLVGVIEHIGPSTRSGHMVAYVRPNQEQPHGGP 835
>06_01_0835 - 6315762-6316844
Length = 360
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 292 WYGSAVWSYGSVSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHRPPDDVK 116
+Y A SY ++ P T+ + + PP SSF + A A +AH P+ ++
Sbjct: 72 YYLPASSSYAAIVPPPTTTTNTTTSFSELPPLPPSSSSFASPANAAAVGLAHLGPEQIQ 130
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -2
Query: 256 SPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHR--PPDDVKGSARPPKVVVV 83
SP S + P S TP SS + H PP VK S+ PP+ V
Sbjct: 789 SPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVS 848
Query: 82 AHPLTIPQLSTSEVPGKH 29
+ P P+ S+S P H
Sbjct: 849 SPP---PEKSSSPPPEAH 863
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Frame = +3
Query: 369 PYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTT-------GFGTQPSPYAYSSYN 527
PY PP + SS P Y G G G+ P+T G+G PS SY
Sbjct: 37 PYGEKPPKEGKTSSSSA---PYY---GGGGGYGAPPSTQPYGSGGGYGAPPSTQRPQSYG 90
Query: 528 GGLSQTFTPTQQDY 569
GG P+ Q Y
Sbjct: 91 GGYGA--PPSSQPY 102
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 490 ALSPHHTHILHTMEDYRKPSLLHNKIIVIMQPAT 591
A PHH H H Y P +N +PAT
Sbjct: 18 AADPHHPHYPHPYAGYPYPYAAYNPAAPASEPAT 51
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 360 YNQPYAAYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSY 524
Y PYA YP P+ N ++ + P ++ +V Q PYA Y
Sbjct: 26 YPHPYAGYPYPYAAYNPAAPASEPATAASSSYYYPTAVSAAASAGQYDPYAAYQY 80
>10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 426 TPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSSYN 527
T TY + YGM VG PT + S YS +N
Sbjct: 1085 TFTYFTFYGMVAVGLTPTQHMASVVSSAFYSLWN 1118
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Frame = +3
Query: 360 YNQPYA-AYPPPHNTNNRSSCKATPTYLSAYGMSGVGSVPTTGFG----------TQPSP 506
+N YA + PPP + + +AT + Y G P G+G + +
Sbjct: 258 FNISYARSQPPPPSVSYEHRLQATDARVHYYAGEGNPQAPPLGYGGGYGYPPQGSSSYNQ 317
Query: 507 YAYSSYNGGLS 539
YAY Y GG S
Sbjct: 318 YAYGGYYGGAS 328
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Frame = +2
Query: 323 RQRGFVVRQLWSLQ---------PALRCISSTAQHEQQIVMQSDAYIPQCVRDEWSWKCA 475
R+RGF + +LW + AL I ++H + M P C R W++ +
Sbjct: 292 RRRGFRITKLWQTKIMQAADTDISALVEIEKNSRHRFEFFMDLVGDQPVCARTAWAYMKS 351
Query: 476 HHRIRHS 496
RI H+
Sbjct: 352 GGRISHA 358
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 459 GVGSVPTTGFGTQPSPYAYSSYNGGLSQTFTPTQQDYSNY-AAGYAE 596
G G+ P GFGT PS + G +F P+ +S Y AG+ +
Sbjct: 410 GFGTPPLGGFGTPPSGFGPPGSFNGSGSSFGPSSA-FSPYGGAGHRD 455
>02_01_0140 + 1014594-1016048
Length = 484
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 196 PPVLSSFINQATAEDEEVAHRPPDDVKGSARPPKVV 89
P VLS +N E VA R G+ PPKV+
Sbjct: 199 PTVLSMIVNATAEEQRPVARRVTVMTGGAPPPPKVL 234
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 369 PYAAYPPPHN---TNNRSSCKATPTYLSAYGMSGVGSVPTTGFGTQPSPYAYSS 521
P+ +PPP + + +SS + P Y Y P T + P PY Y+S
Sbjct: 216 PFNKFPPPSHQYPSPPQSSYHSPPPY--QYTPPNSYQAPPTSYNHPPPPYGYNS 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,324
Number of Sequences: 37544
Number of extensions: 388059
Number of successful extensions: 1386
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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