Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1911
(638 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 24 1.1
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 3.3
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 4.4
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 5.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 24.2 bits (50), Expect = 1.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 350 LWSLQPALRCISSTAQHEQQIVMQSDAYIPQCVRDEWSWKCAHHRIRHSALTIRIFF 520
LWSL P + STA Q+ ++S P RD W + + L +R+ F
Sbjct: 100 LWSLVPHMAWQLSTAHLLAQLFLKSTEVTP---RDGLGWLLLMLYLLFATLPLRLSF 153
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 496 SPHHTHILHTMEDYRKPSLLHN 561
SPHH H HTM P H+
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHH 354
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.2 bits (45), Expect = 4.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 142 AHRPPDDVKGSARPPKVVVVAHPLTIPQLSTSEVPGKHKLSTVLDV 5
A PP+ V + P ++ P+L + PG+H TV DV
Sbjct: 95 AGTPPEAVSYNVAVPTKSILEKK---PELVDATDPGEHNGDTVTDV 137
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 259 VSPYSATSASQSPGLRTSLFTPPVLSSFINQATAEDEEVAHR 134
+ P A S S S + + TP ++ + E EE+ HR
Sbjct: 302 IEPAEAESLSTSGS--SGILTPVSPYGYVKPISPEQEELIHR 341
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 438 IVFTLFTVLATIVILCRA 455
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 506 IVFTLFTVLATIVILCRA 523
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 602 IVFRVAGCIITIILLCRS 549
IVF + + TI++LCR+
Sbjct: 506 IVFTLFTVLATIVILCRA 523
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,959
Number of Sequences: 438
Number of extensions: 4052
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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