Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1910
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.061
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 0.99
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 4.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.0
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 26 4.0
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.0
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 7.0
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.0
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 9.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.2
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.9 bits (69), Expect = 0.061
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 PVTSLTTVVSPG---STTISKLASSVVHPSPLVYSTPYGYTHFIKKRXXXXXXXXXXXXX 172
P+TS T V S S+T+ ++ + S L STP + +
Sbjct: 1199 PITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSST 1258
Query: 173 XXXXXXXXTTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT 352
T + TP+ +ST+ +SIP+ S + S+ I + + I SS +
Sbjct: 1259 PITSS---TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLN 1315
Query: 353 PNTYIASGPLGATTYTTPFVQTVPIASTASLPVEAHLIKKKVCPRLAKTYTGPTT 517
+T I S + T +TP + + S S P+ + + P + T +T
Sbjct: 1316 SSTPITSSTVVNT--STPITSSSVLNS--STPITSSTVVNSSTPITSSTVVNTST 1366
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 0.99
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 324 ATSLLAPT-SLPTPTSQVALLEPLPTRHPS 410
ATS L PT S P TS +L LPT +PS
Sbjct: 306 ATSTLQPTTSSPITTSAPSLSSALPTTYPS 335
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 242 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT------PNTYIASGPLGATTYTT 403
VSS+PL S + +H P P SY++ ++ + + + S P +Y+T
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519
Query: 404 PFVQTVPIASTASL 445
T PI + SL
Sbjct: 520 SSNFTTPITISTSL 533
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 338 SSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 451
S+ T +T I +G G+++ +TP TVP ST+S +
Sbjct: 226 STSCTTSTSIPTG--GSSSLSTPITPTVPPTSTSSTSI 261
Score = 25.4 bits (53), Expect = 5.3
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 215 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLG-AT 391
T +T +S P+I++ + ++ S P+ PS+ + T + P G ++
Sbjct: 73 TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL----PSTSTSCTTSTSIPPTGGSS 128
Query: 392 TYTTPFVQTVPIASTASLPV 451
+ +TP TVP ST+S +
Sbjct: 129 SLSTPITPTVPPTSTSSTSI 148
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/76 (18%), Positives = 29/76 (38%)
Frame = +2
Query: 227 ASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 406
A T + + + ++QP+ A + P + S P +++ G P
Sbjct: 255 AGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQVFPATQMP 314
Query: 407 FVQTVPIASTASLPVE 454
F+Q + S+P +
Sbjct: 315 FLQQPKVTQNISIPAD 330
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 254 PLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIAS 433
P+ QPIA + ++ P+ A + TPNT + L A Q VP+ S
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTS 291
Query: 434 TASLPV 451
+ ++ V
Sbjct: 292 SPAMAV 297
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 188
S I PW T+ + ISS GL+ L ++L+ H ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 360 PTSQVALLEPLPTRHP-SCRP 419
PTS +ALLE P HP SC P
Sbjct: 171 PTSLIALLELPPVIHPLSCVP 191
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 320 VSYIAPSSYITP-NTYIASGPLGATTY 397
V Y++P+ TP + +I PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.0
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 311 QWPVSYIAPSSYITPNTYI-ASGPLGATTYTTPFVQTVPIAS-TASLPVEAHLIKKKVCP 484
Q P+ APS + + AS A T V T+P TAS+ A I P
Sbjct: 870 QLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPP 929
Query: 485 RLAKTYTGPT 514
++ +TY PT
Sbjct: 930 KVGETYHPPT 939
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 8 TSLTTVVSPGSTTISKLASSVVHPSPLVYSTPYGYT 115
TS + SP T + ++ HP+ +VY P T
Sbjct: 546 TSTVDIRSPLGTFAERNFQTIYHPNKIVYMLPLNIT 581
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 377 PLGATTYTTPFVQTVPIASTAS-LPVEAHL 463
P + TTP++QT P A+ + LP++ H+
Sbjct: 32 PSANPSLTTPWLQTTPSANRPTWLPLQQHM 61
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 299 KRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQT 418
K P W +A Y+A L TTY+ P + T
Sbjct: 137 KLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIAT 176
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 332 APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTA 439
AP+ PNT A+ P+ +TT T TV + A
Sbjct: 1028 APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPA 1063
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,459
Number of Sequences: 5004
Number of extensions: 39769
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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