Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1910
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.027
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 30 1.0
05_03_0090 - 8330283-8330831 30 1.3
03_06_0546 - 34646946-34647289,34647542-34647608 30 1.3
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 1.7
11_02_0069 - 8002358-8003407,8003563-8003678,8003770-8003809,800... 28 4.0
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 5.3
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 27 7.1
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 27 7.1
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 7.1
05_01_0242 + 1804183-1806096 27 7.1
02_05_0570 + 30070338-30071606 27 7.1
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 27 7.1
01_01_0088 + 688792-691441,691629-693013 27 7.1
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 27 9.3
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 27 9.3
08_01_0903 - 8897977-8899016,8899128-8899300,8901553-8901666,890... 27 9.3
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +3
Query: 315 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSKLI 461
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 230 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 382
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 383 GATTYTTPFVQTVPIASTASLPVEAHLIK 469
G ++ T + + I + +L + + K
Sbjct: 286 GTSSATFQYSRFAAITTFTALRYDFRVFK 314
>05_03_0090 - 8330283-8330831
Length = 182
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHHFPSKLI*SRKRSAP 485
SLPTP L PLP RH P+ CR L H + R RSAP
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSHRRVSPLQGR-RSAP 132
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 115 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 204
SFH E+ CC CCV+ C + C + HL
Sbjct: 79 SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 115 SFHQEE--VCCTCCVYRSCIILCYFSRR 192
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>11_02_0069 -
8002358-8003407,8003563-8003678,8003770-8003809,
8003967-8004005
Length = 414
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 392 TYTTPFVQTVPIASTASLPVEAHLIKKKVCPRLAKTYTGP 511
T +P ++ A+ P + K CPR K Y GP
Sbjct: 360 TSRSPLADMTNVSEVAAAPTTTEIRGKWKCPRKGKHYVGP 399
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 305 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 412
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 287 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 406
+F+ + SPQ P AP + Y + P G T+Y +P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 387 PLPTRHPSCRPCRSHRLHHFPSKLI*SRKRSAPGWRKLTPDLLLTPV 527
P TR P R H F KL+ R R G+R + D+++ +
Sbjct: 86 PRVTRCRPLTPLRRKIRHRFEQKLVVLRGRKGEGFRAILGDIMMKQI 132
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 309 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPS 410
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 369 QVALLEPLPTRHPSCRPCRSHR 434
++ LL PLP RH S P SHR
Sbjct: 7 RLRLLLPLPRRHLSTAPATSHR 28
>02_05_0570 + 30070338-30071606
Length = 422
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 387 PLPTRHPSCRPCRSHRLHHFPSK 455
P T C+PC HR H+ K
Sbjct: 355 PFVTHFTGCQPCSGHRNEHYTGK 377
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 376 PSW--SHYLH-DTLRADRADRIDCIT 444
PSW S+ +H DTL D +R+DCI+
Sbjct: 1311 PSWLGSNIIHLDTLHLDGLERLDCIS 1336
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 376 PSW--SHYLH-DTLRADRADRIDCIT 444
PSW S+ +H DTL D +R+DCI+
Sbjct: 867 PSWLGSNIIHLDTLHLDGLERLDCIS 892
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 354 PTPTSQVALLEPLPTRHP 407
P PT + +++EP+PTR P
Sbjct: 887 PVPTRKPSVIEPVPTRKP 904
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 342 PTSLPTPTSQVALLEPLPTRHPSCRPCRSH 431
PT P+P+ Q LL P P + P + H
Sbjct: 438 PTPPPSPSQQPPLLAPQPVQASPTSPAKQH 467
>08_01_0903 -
8897977-8899016,8899128-8899300,8901553-8901666,
8901743-8901836,8901925-8902103,8902165-8902496,
8913058-8913306
Length = 726
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 WPSWSHYLHDTLRADRADRIDCITSRRSSSDQE-KGLPPAGENLHRTY 513
W +LH +RAD+ +RI+ R + ++ P G+N H Y
Sbjct: 159 WIDLCIHLHGRVRADQLERIEEFIVRIDNVEERLSSQSPIGDNPHMLY 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,456
Number of Sequences: 37544
Number of extensions: 311870
Number of successful extensions: 1143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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