Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1908
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...   105   8e-24
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    27   3.4  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score =  105 bits (251), Expect = 8e-24
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
 Frame = +1

Query: 205 YEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILAFP 384
           Y+   K  +G     S+ KG V+L+VN AS+CG T   Y+ L  L++KY  +G  IL FP
Sbjct: 5   YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTP-QYKGLEALYQKYKDRGFIILGFP 63

Query: 385 CNQFNGQEPGTPKDILNF-TKDRGVKFDLFEKVDVNGDNAHPLWKFLKKAQSR 540
           CNQF  QEPG+ ++I  F  K+ GV F +  K++VNGDN  P+++FLK  + +
Sbjct: 64  CNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQ 116



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 557 IKWNFSKFVVDKERRAPSR 613
           IKWNF KF+V+++ +   R
Sbjct: 122 IKWNFEKFLVNRQGQVIER 140


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 421 KDILNFTKDRGVKFDLFEKVDVNGDNAHPLWKFLKKAQSRD 543
           K++LN TKD G+   +  K  ++  +   +WK + +  S D
Sbjct: 223 KELLNNTKDNGIDQQIVHKEHIS--HLEKIWKNINEESSED 261


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 181 LHETARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQ-CGLTTTNYQQLNELHEK 348
           L  T +  ++ T  ++ G  + L  YKG V  I+N  S+     T + Q ++E  EK
Sbjct: 170 LLSTGKNSHQTTSLNLEGSPINLHAYKGTVTSIINDDSRNINKKTLSKQPVSEHKEK 226


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 576 LLKFHLMKSPIVPALRLLQKLPERMRVVTV 487
           ++ F     PI+P+LRL+ K P+    V V
Sbjct: 71  IILFQHFDGPIIPSLRLVHKCPDAFTQVRV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,369
Number of Sequences: 5004
Number of extensions: 52741
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)