Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1908
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 149 2e-36
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 142 2e-34
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304... 141 4e-34
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 129 2e-30
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433... 128 4e-30
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 70 2e-12
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 31 0.65
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 29 2.6
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 29 4.6
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 149 bits (361), Expect = 2e-36
Identities = 67/116 (57%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Frame = +1
Query: 190 TARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLR 369
+A +V++FTVK +G+DV LS +KG VLLIVNVASQCGLT +NY +L++L+EKY +G
Sbjct: 76 SAASVHDFTVKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKDQGFE 135
Query: 370 ILAFPCNQFNGQEPGTPKDILNFTKDR-GVKFDLFEKVDVNGDNAHPLWKFLKKAQ 534
ILAFPCNQF GQEPGT ++I+ F R ++ +F+KVDVNGDN P++KFLK ++
Sbjct: 136 ILAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSK 191
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSRRYAP 625
G GD IKWNFSKF+VDKE R RYAP
Sbjct: 193 GLFGDNIKWNFSKFLVDKEGRV-VERYAP 220
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 142 bits (345), Expect = 2e-34
Identities = 67/116 (57%), Positives = 91/116 (78%), Gaps = 4/116 (3%)
Frame = +1
Query: 190 TARTVYEFTVKSI---NGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQK 360
+A +V++FTVK + +G+DV LS YKG VLLIVNVASQCGLT +NY +L++L+EKY +
Sbjct: 6 SATSVHDFTVKGVQDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQ 65
Query: 361 GLRILAFPCNQFNGQEPGTPKDILNFTKDR-GVKFDLFEKVDVNGDNAHPLWKFLK 525
G ILAFPCNQF GQEPG+ ++I+ F R ++ +F+KVDVNG+NA PL+K+LK
Sbjct: 66 GFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLK 121
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSRRYAP 625
G GD IKWNFSKF+VDKE R RYAP
Sbjct: 126 GLFGDSIKWNFSKFLVDKEGRVVD-RYAP 153
>11_03_0111 -
10129531-10129563,10129645-10129812,10130366-10130484,
10130589-10130650,10131043-10131119,10131659-10131838
Length = 212
Score = 141 bits (342), Expect = 4e-34
Identities = 66/110 (60%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Frame = +1
Query: 199 TVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILA 378
+V++ +VK I G DVKLS+Y+G VLLIVNVAS+CGLT +NY++LN L+EKY +KGL ILA
Sbjct: 53 SVHDISVKDIKGNDVKLSEYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKEKGLEILA 112
Query: 379 FPCNQFNGQEPGTPKDILNFTKDR-GVKFDLFEKVDVNGDNAHPLWKFLK 525
FPCNQF GQEPG+ ++I R +F +F+K+DVNG A PL+KFLK
Sbjct: 113 FPCNQFAGQEPGSNEEIEQTVCTRFKAEFPIFDKIDVNGKEAAPLYKFLK 162
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSRRYAP 625
G +GD IKWNF+KF+V K+ + RYAP
Sbjct: 167 GFLGDGIKWNFTKFLVGKDGKV-VERYAP 194
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 129 bits (312), Expect = 2e-30
Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Frame = +1
Query: 199 TVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILA 378
+++EFTVK NG++V L YKG VL++VNVAS+CG T TNY QL EL++K+ K ILA
Sbjct: 11 SIHEFTVKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQKHRDKDFEILA 70
Query: 379 FPCNQFNGQEPGTPKDILNFTKDR-GVKFDLFEKVDVNGDNAHPLWKFLKKAQ 534
FPCNQF QEPG+ + I +F R ++ +F+KV VNG +A PL+KFLK ++
Sbjct: 71 FPCNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASK 123
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSR 613
G G IKWNF+KF++DK + +R
Sbjct: 125 GLFGSRIKWNFTKFLIDKNGKVINR 149
>06_01_0600 +
4332886-4332896,4332968-4333067,4333588-4333664,
4333774-4333835,4334016-4334134,4334237-4334404,
4335004-4335123
Length = 218
Score = 128 bits (309), Expect = 4e-30
Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Frame = +1
Query: 220 KSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILAFPCNQFN 399
+ I+G+DV LS +KG LLIVNVASQCGLTT NY +L+ L+EKY +G ILAFPCNQF
Sbjct: 37 QDIDGKDVALSKFKGRALLIVNVASQCGLTTANYTELSHLYEKYKTQGFEILAFPCNQFG 96
Query: 400 GQEPGTPKDILNFTKDR-GVKFDLFEKVDVNGDNAHPLWKFLKKA 531
QEPG+ I F R +F +F+KVDVNG N P++KFLK +
Sbjct: 97 AQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSS 141
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSRRYAP 625
G +GD +KWNF KF+VDK + RY P
Sbjct: 144 GFLGDLVKWNFEKFLVDKTGKV-VERYPP 171
>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 193 ARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQ 357
A +++EFTVK G DV+LS YKG V+LIVN AS+CGLT NY +L +L+ KY +
Sbjct: 915 AGSIHEFTVKDARGSDVELSRYKGKVVLIVNAASRCGLTNYNYTELGQLYGKYKE 969
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 246 AVRLQRERAPHRQCSLSVRPYDHQLSTTQRATRKVPPERSTYTGLSVQPVQRP 404
++ L R P R+ L H+ STT+RA P +R+ LSV P P
Sbjct: 14 SLSLSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAPSASP 66
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 82 PWQRSDHRPPPQYSASTSC 26
PW+R RPPP ++++ +C
Sbjct: 393 PWERETPRPPPHHTSNAAC 411
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 270 APHRQCSLSVRPYDHQLSTTQRATRKVPPERSTYTGLSVQPVQRPRT 410
+P ++ + P+DHQL ++ PP+R+ G++V ++ P T
Sbjct: 375 SPSAPMAVLLEPWDHQLERADLCLQEDPPKRN--EGMAVACIEPPPT 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,429
Number of Sequences: 37544
Number of extensions: 355327
Number of successful extensions: 1138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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