Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1908
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41442| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_24122| Best HMM Match : GSHPx (HMM E-Value=0) 126 2e-29
SB_46155| Best HMM Match : GSHPx (HMM E-Value=4.2039e-45) 107 8e-24
SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39) 74 9e-14
SB_13833| Best HMM Match : GSHPx (HMM E-Value=1.1e-30) 67 1e-11
SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15) 52 4e-07
SB_16630| Best HMM Match : GSHPx (HMM E-Value=0.059) 45 7e-05
SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14) 41 8e-04
SB_10448| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_5168| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 36 0.023
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015) 29 2.7
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.7
SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2) 28 6.2
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13) 28 6.2
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4) 28 6.2
SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4101| Best HMM Match : SRP19 (HMM E-Value=9.7) 28 8.1
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_41442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 126 bits (304), Expect = 2e-29
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 205 YEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILAFP 384
Y FT K I+G+DV + Y+G V+LIVNVAS+CG T NY++L LH KY ++GL ILAFP
Sbjct: 26 YSFTAKDIHGQDVSMEKYRGKVVLIVNVASECGFTDVNYRELVALHNKYSKEGLAILAFP 85
Query: 385 CNQFNGQEPGTPKDILNFTKD-RGVKFDLFEKVDVNGDNAHPLWKFL 522
CNQF QEP I F D GV+FD+F K+ GD +HPL+ FL
Sbjct: 86 CNQFGKQEPKRNYGIYRFAVDYYGVQFDMFSKIKTVGDGSHPLYNFL 132
>SB_24122| Best HMM Match : GSHPx (HMM E-Value=0)
Length = 193
Score = 126 bits (304), Expect = 2e-29
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 205 YEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRILAFP 384
Y FT K I+G+DV + Y+G V+LIVNVAS+CG T NY++L LH KY ++GL ILAFP
Sbjct: 26 YSFTAKDIHGQDVSMEKYRGKVVLIVNVASECGFTDVNYRELVALHNKYSKEGLAILAFP 85
Query: 385 CNQFNGQEPGTPKDILNFTKD-RGVKFDLFEKVDVNGDNAHPLWKFL 522
CNQF QEP I F D GV+FD+F K+ GD +HPL+ FL
Sbjct: 86 CNQFGKQEPKRNYGIYRFAVDYYGVQFDMFSKIKTVGDGSHPLYNFL 132
>SB_46155| Best HMM Match : GSHPx (HMM E-Value=4.2039e-45)
Length = 188
Score = 107 bits (257), Expect = 8e-24
Identities = 58/113 (51%), Positives = 72/113 (63%)
Frame = +1
Query: 196 RTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRIL 375
+T+ +F VK I+G DV LS YKG V LIVNVASQ Y + GLRIL
Sbjct: 47 QTILDFEVKDIDGNDVALSKYKGFVTLIVNVASQ-----------------YAENGLRIL 89
Query: 376 AFPCNQFNGQEPGTPKDILNFTKDRGVKFDLFEKVDVNGDNAHPLWKFLKKAQ 534
AFPCNQF QEPGT ++I F K V+FD+F K++VNG A PL+ FLK+A+
Sbjct: 90 AFPCNQFGKQEPGTAEEIKEFVKQYNVEFDMFAKIEVNGKGADPLYVFLKEAK 142
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 539 GTIGDFIKWNFSKFVVDKERRAPSRRYAP 625
GT+ + IKWNF+KF+ DKE P +RY+P
Sbjct: 144 GTLTNAIKWNFTKFLCDKE-GVPVKRYSP 171
>SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39)
Length = 554
Score = 74.1 bits (174), Expect = 9e-14
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Frame = +1
Query: 325 QLNELHEKYHQKGLRILAFPCNQFNGQEPGTPKDILNFTK----DRGV--KFDLFEKVDV 486
++N+L + Y KGL IL FPCNQF QE T K+ILN K G K +LF K++V
Sbjct: 415 KMNKLIDDYQSKGLVILGFPCNQFGHQENCTEKEILNSLKYVRPGNGFVPKIELFSKIEV 474
Query: 487 NGDNAHPLWKFLKKA 531
NG +AHPL++FLKKA
Sbjct: 475 NGKDAHPLFQFLKKA 489
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 557 IKWNFSKFVVDKERRAPSRRYA 622
I WNF KF++DKE + P +RY+
Sbjct: 517 ISWNFEKFLIDKEGK-PIKRYS 537
>SB_13833| Best HMM Match : GSHPx (HMM E-Value=1.1e-30)
Length = 132
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Frame = +1
Query: 193 ARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGLRI 372
++T+Y+F+ + + G +V+LS YKG ++N+L + Y GL I
Sbjct: 2 SQTLYDFSAQDLGGANVELSKYKG--------------------KMNKLIDDYQSNGLVI 41
Query: 373 LAFPCNQFNGQEPGTPKDILNFTK----DRGV--KFDLFEKVDVNGDNAHPLWKFLKKA 531
L F C QFN + ++ILN K G K +LF K++VNG +AHPL++FLKKA
Sbjct: 42 LGFHCGQFNRENCKNKEEILNSLKYVRPGNGFVPKIELFSKIEVNGKDAHPLFQFLKKA 100
>SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15)
Length = 194
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Frame = +1
Query: 319 YQQLNELHEKYHQK----GLRILAFPCNQFNGQEPGTPKD----ILNFTKDRG---VKFD 465
Y QLN L Y + L++ FPCNQF QEPG D L F + KF
Sbjct: 34 YPQLNALAVNYGKVEDVCSLKVFGFPCNQFGKQEPGDNADEIRNSLRFVRPGNGFVPKFP 93
Query: 466 LFEKVDVNGDNAHPLWKFLK 525
L + DVNG+ HP + FLK
Sbjct: 94 LMNRTDVNGNKQHPAYTFLK 113
>SB_16630| Best HMM Match : GSHPx (HMM E-Value=0.059)
Length = 49
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +1
Query: 406 EPGTPKDILNFTKDRGVKFDLFEKVDVNGDNAHPLWKFLK 525
EP I F GVKFD+F KV+VNG +A PL+K+LK
Sbjct: 1 EPDPEPVIKQFAAGYGVKFDMFAKVNVNGSSALPLYKYLK 40
>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
Length = 444
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +1
Query: 211 FTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHE-----KYHQKGLRIL 375
+T K ++G+ L+ Y+ +V+L+VNVA+ Y LN+L + K + GL +L
Sbjct: 118 YTSKDLDGKVHPLNVYRDHVVLVVNVATFSRFAD-QYNDLNKLMDEVPGNKEGKCGLIVL 176
Query: 376 AFPCNQFNGQEP 411
AFP NQ +EP
Sbjct: 177 AFPSNQIGFKEP 188
>SB_10448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 1 PDTALSFKYKKYLQSTVVEDGGHFAAMEYPELMAKDITQAV 123
P LS + +Q T + GGHFAA++ PEL+A+D+ + V
Sbjct: 21 PQPWLSATFIDIIQHTEMPRGGHFAALQEPELLAQDVMEFV 61
>SB_5168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 36.7 bits (81), Expect = 0.018
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 166 NETPPLHETARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHE 345
N + P A ++ EF ++ ++G K+ D + V+L+VN LN L E
Sbjct: 25 NMSGPCTAIAGSINEFQLEDLDG---KVQDLRDKVVLVVN--------------LNALKE 67
Query: 346 KYHQK--GLRILAFPCNQFNGQEP 411
++ GL I+ FPCNQF EP
Sbjct: 68 RFKSDRCGLEIVGFPCNQFKLHEP 91
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 551 DFIKWNFSKFVVDKERRAPSRRYAP 625
D I WNF KF++D R P RRY P
Sbjct: 190 DDISWNFEKFLID-HRGKPVRRYKP 213
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 187 ETARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNELHEKYHQKGL 366
E +T +F+ S G+ + L + G V +I AS C + L+ +YH KGL
Sbjct: 152 EVGKTAPDFSAPSPEGKTISLKESMGKVTIIDFWASWCQPCRVENPAVVALYNEYHAKGL 211
Query: 367 RIL 375
I+
Sbjct: 212 NII 214
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 321 STTQRATR-KVPPERSTYTG-LSVQPVQRPRTRYT*GHS 431
S+T +ATR VPPE YTG SV P P T T G +
Sbjct: 3170 SSTAKATRPSVPPEEPVYTGQFSVNPTPSPSTLVTPGEA 3208
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 685 LSITKFWAKFLFPDPSGLTCGG---VSSRRGTPFLVDYELTKVPLDEVTNRPGSAP 527
L + + F DP+ G V+ R P+ YEL K+PL +VT+ P AP
Sbjct: 639 LGMANYGHAFELSDPTKTALGAPANVNKGRSYPY---YELCKLPLTKVTDNPAKAP 691
>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
Length = 1238
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 184 HETARTVYEFTVKSINGRDVKLSDYKGNVLLIVNVASQCGLTTTNYQQLNE-LHEKYHQK 360
+ +A +Y+ ++ + +V L DY + +++N Q G + +Y+ L E L + Q
Sbjct: 956 YSSAALLYKEALQVLKKDEVPLEDYAHKMEMVINFLIQAGQYSESYEMLKERLEIEEKQL 1015
Query: 361 GLR 369
G R
Sbjct: 1016 GAR 1018
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 320 INNSTSYTKSTTRKVYVYWPFRATSSTAKNQVHLRTF*TSQKTEALNLICSKK 478
+N+ T T +T +K V + RAT +T KN+ HL T S+K +I + K
Sbjct: 1545 VNHVTEKTPAT-KKPEVPFSQRATETTKKNEPHLETERKSKKDLTEPIIANLK 1596
>SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2)
Length = 280
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 567 FHLMKSPIVPALRLLQKLPERMRVVTVHINFFEQIKFNASVFCEV 433
F ++K + P L +K E+M+++TV+ + F+Q+ A F E+
Sbjct: 71 FEVVKEDLTPLLS--RKAAEQMKLITVNYDNFKQVHVVADGFTEL 113
>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 637
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 567 FHLMKSPIVPALRLLQKLPERMRVVTVHINFFEQIKFNASVFCEV 433
F ++K + P L +K E+M+++TV+ + F+Q+ A F E+
Sbjct: 2 FEVVKEDLTPLLS--RKAAEQMKLITVNYDNFKQVHVVADGFTEL 44
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 567 FHLMKSPIVPALRLLQKLPERMRVVTVHINFFEQIKFNASVFCEV 433
F ++K + P L +K E+M+++TV+ + F+Q+ A F E+
Sbjct: 2 FEVVKEDLTPLLS--RKAAEQMKLITVNYDNFKQVHVVADGFTEL 44
>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
Length = 330
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 168 RNAASPRDRENSIRIYS*INKRTRRQAVRLQRERA----PHRQCSLSVRP--YDHQLSTT 329
R+A S R R Y I + +R+ + +R + P ++C + P HQ S
Sbjct: 182 RSACSARRRRRHSHHYRRICRYRQRRPLTPKRPKTRQLPPEQRCKSTQSPRILSHQQSHP 241
Query: 330 QRATRKVPPERSTYTGLSVQPVQR-PRTR 413
+R K PP R G V Q PR R
Sbjct: 242 KRLALKSPPRRPGRKGHPVSTQQTLPRER 270
>SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 294 SVRPYDHQLSTTQRATRKVPPERSTYTGLSVQPVQRPRT 410
+V P DHQ + + PERS T ++ + Q RT
Sbjct: 473 TVNPNDHQHQQVRHLKKHSEPERSASTDVTFEKTQSTRT 511
>SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 567 FHLMKSPIVPALRLLQKLPERMRVVTVHINFFEQIKFNASVFCEV 433
F ++K + P L +K E+M+++TV+ + F+Q+ A F E+
Sbjct: 46 FEVVKEDLTPLLS--RKAAEQMKLITVNYDNFKQVHVVADGFTEL 88
>SB_4101| Best HMM Match : SRP19 (HMM E-Value=9.7)
Length = 699
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = -3
Query: 643 PSGLTCGGVSSRRGTPFLVDYELTKVPLDEVTNRPGSAPSSETSRADARC 494
P CG R P V YEL PL E PG E S A A C
Sbjct: 185 PGRYRCGYFGERTRVPRYVRYELR--PLPEQNGDPGPMFEREGSDAFANC 232
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 567 FHLMKSPIVPALRLLQKLPERMRVVTVHINFFEQIKFNASVFCEV 433
F +K + P L +K E+M+++TV+ + F+Q+ A F E+
Sbjct: 277 FEFVKEDLTPLLS--RKAAEQMKLITVNYDNFKQVHVVADGFTEL 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,328,221
Number of Sequences: 59808
Number of extensions: 420435
Number of successful extensions: 1302
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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