Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1908
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.89 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.3  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K+LE R +R   + +  R++     ENS R Y   +K   R  +  +R R P    SLS
Sbjct: 261 KLLEERTSRKRYSRSREREQRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLS 319


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K+LE R +R   + +  R++     ENS R Y   +K   R     +R R P    SLS
Sbjct: 261 KLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLS 319


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K+LE R +R   + +  R++     ENS R Y   +K   R     +R R P    SLS
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLS 86


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLSV 299
           K+LE R +R   + +  R++     ENS R Y    K   R     +R R P    SLS 
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87

Query: 300 R 302
           R
Sbjct: 88  R 88


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 62 PSSTTVLCKYFLYLKLNAV 6
          PS++ +L  YF++L  N++
Sbjct: 12 PSTSFILINYFIFLYFNSL 30


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 373 VYVDLSGGTFRVAR*VVDSWWS 308
           V + L+GGT+ +   + DSW S
Sbjct: 95  VLLQLTGGTWELGPMLCDSWVS 116


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 439 TKDRGVKFDLFEKVDVNGDNAHPLWKFLKKAQSRD 543
           +K  G++FD+  KVD+       L + L+++ + D
Sbjct: 123 SKKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALD 157


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 135 KILEVRKTRI*RNAASPRDR-----ENSIRIYS*INKRTRRQAVRLQRERAPHRQCSLS 296
           K LE R +R   + +  R++     ENS R Y   +K   R     +R + P    SLS
Sbjct: 28  KFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKERSRDRTERERSKEPKIISSLS 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,130
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)