Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      20   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   6.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   8.7  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 110 WFFLILRWVDELTD 69
           W F  +RWV +L D
Sbjct: 260 WAFAPIRWVAKLWD 273


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 63  RVVCELVHPSKY*KKPL 113
           RVVC +   ++Y K+PL
Sbjct: 176 RVVCYVQAAARYRKEPL 192


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 183 FVSFPTIPSQILTLPSKKKKKNGPRP 260
           +V   T+P+Q +   S+ ++ N P P
Sbjct: 330 YVRNTTVPTQGVARMSRGRQYNYPNP 355


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 183 FVSFPTIPSQILTLPSKKKKKNGPRP 260
           +V   T+P+Q +   S+ ++ N P P
Sbjct: 278 YVRNTTVPTQGVARMSRGRQYNYPNP 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,531
Number of Sequences: 336
Number of extensions: 1442
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)