Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   3.2  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    24   4.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   4.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   4.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   5.6  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    23   9.9  

>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 228 SKKKKKNGPRPLEGGPGTQF 287
           SKKK+KN  +    GP  QF
Sbjct: 37  SKKKRKNRKKKKNNGPSEQF 56


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 55  LNTVWSVSSSTHLSIKKNHS 114
           + ++W  +S  HL  +KNHS
Sbjct: 178 IGSIWQNASHEHLIAQKNHS 197


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 87   PSKY*KKPLRRECTIVTNKNLNIATGNRTAN 179
            P +Y     +REC ++   + NI TG+ + N
Sbjct: 1135 PIRYLDNATKRECWVIPILSANIGTGSPSWN 1165


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 159 WLYSNFCSSQSYTPDGVVFFNT 94
           W Y + C +  +  DG  FF T
Sbjct: 655 WAYVDNCEANFFCKDGTYFFRT 676


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 216  LTLPSKKKKKNGPRP 260
            LTL  K KKK GP P
Sbjct: 1041 LTLNGKPKKKRGPAP 1055


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 QILTLPSKKKKKNGPRP 260
           Q + + S+KK+KN P P
Sbjct: 143 QFIQIESRKKRKNSPDP 159


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 LRRECTIVTNKNLNIATGNRTAN*FVSFPTIPSQILTLPSKKKKKN 248
           ++ EC ++ +K +N+     T    +S  ++PS   T   K+K +N
Sbjct: 727 IKLECALLRDKFVNMPELFETTYQSLSRKSLPSFASTAADKEKSQN 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,285
Number of Sequences: 5004
Number of extensions: 23322
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)