Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0061 + 13013963-13014070,13015228-13015422,13017927-130180...    29   0.92 
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381...    27   2.8  
09_02_0464 - 9591139-9591571,9592601-9592818                           25   8.6  

>11_04_0061 +
           13013963-13014070,13015228-13015422,13017927-13018046,
           13018377-13019015
          Length = 353

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 195 PTIPSQILTLPSKKKKKNGPRPLEGG 272
           PTIP++ L  P++KK  + P+P + G
Sbjct: 13  PTIPAKKLEQPAQKKSPSAPKPKKKG 38


>04_04_0760 -
           27837170-27837328,27837441-27837504,27837812-27838160,
           27838906-27838960,27839489-27839821
          Length = 319

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -3

Query: 188 YKSIRGSIT---GGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLS 54
           Y +IR ++    G +IQ+    N  +  EW F  L W  +   H  L+
Sbjct: 54  YYNIRAAVANLRGRFIQVSPTSNPKIFVEWHFSALPWQQQQQQHNQLN 101


>09_02_0464 - 9591139-9591571,9592601-9592818
          Length = 216

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHT 63
           G++ Y++I  +   G +   V ++ T     F  + RW+ EL DHT
Sbjct: 70  GQERYRAITSAYYRGAVGALVVYDVTRHVT-FENVERWLKELRDHT 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,615,388
Number of Sequences: 37544
Number of extensions: 160099
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)