Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41971| Best HMM Match : CAT_RBD (HMM E-Value=2)                     27   3.9  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            27   3.9  
SB_29447| Best HMM Match : VWA (HMM E-Value=0.36)                      27   3.9  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             27   3.9  
SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2)                     27   3.9  
SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5)                   27   3.9  
SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)                    26   5.1  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         26   6.7  
SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)               26   6.7  
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       25   8.9  
SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)                    25   8.9  
SB_9684| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.9  

>SB_41971| Best HMM Match : CAT_RBD (HMM E-Value=2)
          Length = 295

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 109 GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 155


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 14  GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 60



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 811 GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 857


>SB_29447| Best HMM Match : VWA (HMM E-Value=0.36)
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 52  GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 98


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 639 GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 685


>SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2)
          Length = 318

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 52  GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 98


>SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5)
          Length = 238

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 52  GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 98


>SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F++      LTDH  LSC
Sbjct: 380 GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFIVNPLEPHLTDHCSLSC 426


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 192 FPTIP--SQILTLPSKKKKKNGPRPLEGG 272
           FPT P  S++  +P +K   + P+P EGG
Sbjct: 755 FPTWPAKSEMQKMPRRKDHGHSPKPPEGG 783


>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
          Length = 632

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 131 NRTLPTEWF-FLILRWVDELTDH 66
           NR+   EW  FL  R+VD++T+H
Sbjct: 57  NRSKDVEWVSFLTTRFVDDITNH 79


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 90  MGGRAHRPHGVKLLLEPIDIYD-VNAP 13
           +  R H  H V+ LL+P+ IYD V+ P
Sbjct: 294 VAARDHMLHVVRSLLQPVTIYDSVDTP 320


>SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)
          Length = 149

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 228 SKKKKKNGPRPLEGGP 275
           SKKKKK G    EGGP
Sbjct: 83  SKKKKKKGRNTKEGGP 98


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 222 LPSKKKKKNGPRPLEG 269
           LP  K+   GPRPLEG
Sbjct: 89  LPPPKRSIRGPRPLEG 104


>SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)
          Length = 248

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 85 WTSSQTTRC*VVTGAHRHLRCKCAT 11
          W  S  + C      +RH+ C CAT
Sbjct: 2  WKRSDVSCCNCTEKKYRHVHCPCAT 26


>SB_9684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 200 GRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTVLSC 51
           G+KT     GS    YI +   +N +L    +F +      LTDH  LSC
Sbjct: 118 GKKTCFRYNGSSVVDYIIV---NNESLDIVDYFTVNPLEPHLTDHCSLSC 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,775
Number of Sequences: 59808
Number of extensions: 177393
Number of successful extensions: 467
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)