Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.            29   2.0  
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote...    29   2.0  
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.              29   2.0  
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v...    29   2.0  
AK223377-1|BAD97097.1|  467|Homo sapiens chromosome 11 open read...    28   6.2  
AJ400877-5|CAB92289.1|  467|Homo sapiens C11orf16 protein protein.     28   6.2  

>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 117  RECTIVTNKNLNIATGNRTAN*FVSFPTIPSQI---LTLPSKKKKKNGP 254
            ++C +  N ++  ++ ++  N F SFPT  S I      P K K+K  P
Sbjct: 2575 KKCELSKNSDIEQSSDSKVKNLFASFPTEESSINYTFKTPEKAKEKKKP 2623


>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
            protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 117  RECTIVTNKNLNIATGNRTAN*FVSFPTIPSQI---LTLPSKKKKKNGP 254
            ++C +  N ++  ++ ++  N F SFPT  S I      P K K+K  P
Sbjct: 2575 KKCELSKNSDIEQSSDSKVKNLFASFPTEESSINYTFKTPEKAKEKKKP 2623


>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 117  RECTIVTNKNLNIATGNRTAN*FVSFPTIPSQI---LTLPSKKKKKNGP 254
            ++C +  N ++  ++ ++  N F SFPT  S I      P K K+K  P
Sbjct: 2575 KKCELSKNSDIEQSSDSKVKNLFASFPTEESSINYTFKTPEKAKEKKKP 2623


>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
            variant protein.
          Length = 3138

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 117  RECTIVTNKNLNIATGNRTAN*FVSFPTIPSQI---LTLPSKKKKKNGP 254
            ++C +  N ++  ++ ++  N F SFPT  S I      P K K+K  P
Sbjct: 2489 KKCELSKNSDIEQSSDSKVKNLFASFPTEESSINYTFKTPEKAKEKKKP 2537


>AK223377-1|BAD97097.1|  467|Homo sapiens chromosome 11 open reading
           frame 16 variant protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 FVSFPTIPSQILTLPSKKKKKNGPRPLEGGPGTQFA 290
           F+  P   S +     +  K+NGP P  G PGT+++
Sbjct: 371 FLEMPLRQSGLCQPEWRYWKRNGPEPCPGKPGTRYS 406


>AJ400877-5|CAB92289.1|  467|Homo sapiens C11orf16 protein protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 FVSFPTIPSQILTLPSKKKKKNGPRPLEGGPGTQFA 290
           F+  P   S +     +  K+NGP P  G PGT+++
Sbjct: 371 FLEMPLRQSGLCQPEWRYWKRNGPEPCPGKPGTRYS 406


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,794,109
Number of Sequences: 237096
Number of extensions: 894479
Number of successful extensions: 1985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)