Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1906
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    30   0.28 
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    28   1.5  
U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm recept...    27   3.4  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z71259-2|CAA95790.1|  336|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 164 TGGYIQIFVRHNRTLPTEWFFLILRWVDELT 72
           T     +F+R   ++P EWF LI+ ++  LT
Sbjct: 254 TSSITSVFIRFRDSIPLEWFHLIISYLTGLT 284


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical
           protein ZK970.6 protein.
          Length = 1122

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 201 IPSQILTLPSKKKKK-NGPRPLEGGPGT 281
           IPS  L +P K+K+K N  R L+ GP T
Sbjct: 527 IPSIQLIMPQKEKRKPNSRRSLQSGPST 554


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 198 TIPSQILTLPSKKKKKNGPRPL--EGGPGTQFAL 293
           T P + LT+ +KKK  N P+PL  +G    +FA+
Sbjct: 89  TFPIRKLTIENKKKITNSPKPLAFKGSNYAEFAI 122


>U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm receptor
           protein 129 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 157 AIFKFLFVTIVHSRRSGFF*YLDGWTSSQTT 65
           A  + L + ++H  +SG   YLDG    QTT
Sbjct: 55  AFIEILTMPVLHIHKSGVLFYLDGVLKFQTT 85


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 159 WLYSNFCSSQSYTPDGVVFFNT*MGGRAHRPHGVKLLLEPIDIYDVNAPP 10
           W ++N CS  +Y  D +  F      +A     +KLL E +  Y +   P
Sbjct: 117 WTFTNNCSEPAYVIDALNHFKVHFNHKATFHLTLKLLPEMVHAYKMCVKP 166


>Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical
           protein R03D7.8 protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 186 QINSRFDYRWLYSNFCSSQSYTPD 115
           +INS +D+ + Y   C S+S+ P+
Sbjct: 67  KINSEYDFDFYYRVGCESKSFNPE 90


>Z71259-2|CAA95790.1|  336|Caenorhabditis elegans Hypothetical
           protein F13G3.2 protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 203 NGRKTYKSIRGSITGGYIQIFVRHNRTLPTEWFFLILRWVDELTDHTV--LSCY 48
           N R +  S+RG I  G+I  F+       T+W F ++R    + +H+   LS Y
Sbjct: 127 NWRLSRTSLRGLIICGHIAPFIATAIPFTTQWDFDVVR-AQSVKEHSTYDLSIY 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,939
Number of Sequences: 27780
Number of extensions: 135082
Number of successful extensions: 335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)