Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1905
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   1.6  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    27   1.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   2.9  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    25   5.0  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   6.7  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 309 TYNIFEVKVCKYLKHERGVHAAVMRR 386
           TY IFE    KY ++E+ + +A+M R
Sbjct: 315 TYEIFERDPVKYAQYEQAIFSALMDR 340


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 431 FFILSIRCHCTHPSQPSHNC 372
           FF   +R HC     P+HNC
Sbjct: 15  FFAALVRGHCLTVKSPTHNC 34


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 394 HLNLRITAACTPLSCFKYL 338
           +LNLR T+  TP  CF++L
Sbjct: 554 YLNLRYTSFITPQLCFEFL 572


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 332 FYFKNIICLKKPNNELYFSGNS 267
           F F++ IC K  ++EL F GNS
Sbjct: 77  FQFRSGICSKVRSDELGFKGNS 98


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 329 YFKNIICLKKPNNELYFSGNSSRNTFVVKRLT*YTYKRKHFKLMQV 192
           + KN+  LK  + EL+  G    ++FVVK    Y  K+  F ++ +
Sbjct: 392 HVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYA-KQNSFDVILI 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,794
Number of Sequences: 5004
Number of extensions: 34273
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)