Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1905
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    27   4.4  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   5.9  
AL132853-8|CAB60436.2|  511|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical
           protein F29B9.5 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 341 LTYFYFKNIICLKKPNNELYFSGNSSRNTFV 249
           L  F+F  +IC+ + N+EL+ S + + + F+
Sbjct: 3   LIIFFFPQLICILQLNHELFMSDSPTMSEFM 33


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 419 SIRCHCTHPSQPSHNCRMHSSFML*VLTYFYFKNIICLKKPNNELYFSGNSSRNTFVVKR 240
           SI C+  +    S      S F L + T F    +     P+N++Y+      + FV+K 
Sbjct: 21  SINCYLIYSIFYSKRITWKSEFSL-IYTRFAIDIVYTFFVPHNKIYYVLRQISDIFVMKN 79

Query: 239 LT*Y 228
           LT Y
Sbjct: 80  LTFY 83


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 157 RNKSVYFNRLRVTCISLKCFLL*VYYVNLFTTNVFLLEF 273
           R+ S+ FNR R+TC   K     +  +  F  +  ++EF
Sbjct: 132 RHNSIQFNRFRITCKRFKTVYYSIRIMLAFIYSFTIIEF 170


>AL132853-8|CAB60436.2|  511|Caenorhabditis elegans Hypothetical
           protein Y80D3A.5 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 352 CFKYLHTFTSKILYV*KNQTTNSTLVETLV 263
           C K LH FTSK +Y  K +   +  VE L+
Sbjct: 243 CVKILHEFTSKAIYARKAKVDAAGGVEQLL 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,011
Number of Sequences: 27780
Number of extensions: 193581
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)