Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1905
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   0.64 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   0.64 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.0  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 172 YFNRLRVTCISLKCFLL*VYYVNLF 246
           YFNR  ++   L C+ + VY+V LF
Sbjct: 206 YFNRGLLSASYLVCYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 172 YFNRLRVTCISLKCFLL*VYYVNLF 246
           YFNR  ++   L C+ + VY+V LF
Sbjct: 82  YFNRGLLSASYLVCYGIWVYFVPLF 106


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 177 KVNTFITLNNFHIKYLD 127
           ++NTF   NN  +KY D
Sbjct: 333 EINTFCPKNNKELKYDD 349


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -1

Query: 434 SFFI---LSIRCHCTHPSQPSHNCR 369
           S+F+   +SI+C+C       H CR
Sbjct: 19  SYFVTPTMSIKCNCKRHVIKPHICR 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,874
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)