Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1902
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 94 1e-20
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 94 1e-20
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 94 1e-20
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 94 1e-20
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 94 1e-20
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 94 1e-20
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 94 1e-20
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 94 1e-20
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 89 3e-19
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 89 3e-19
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 89 3e-19
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.33
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 1.7
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 4.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 5.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 7.0
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 9.3
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 9.3
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/114 (43%), Positives = 65/114 (57%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL A + V YMDDILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 89.4 bits (212), Expect = 3e-19
Identities = 48/114 (42%), Positives = 64/114 (56%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL + V YMD+ILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 89.4 bits (212), Expect = 3e-19
Identities = 48/114 (42%), Positives = 64/114 (56%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL + V YMD+ILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 89.4 bits (212), Expect = 3e-19
Identities = 48/114 (42%), Positives = 64/114 (56%)
Frame = +2
Query: 188 KKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEAS 367
KK R+ VDY+ LN+ K YPLP +E L + G+T+FT LDL S Y+ V +
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516
Query: 368 RSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
K AF G +EY MP+G+ AP+ FQ I+ IL + V YMD+ILI
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILI 570
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 94 QLVRDMVKEMVDNGRARESSSSYASPIVLVQKKE 195
Q + D + + + +G RES + A P++ V KKE
Sbjct: 426 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 191 KNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDL--ASGYYQTPVAE 361
KN+E +D + N +PK + ++LD + L +LDL G+ +T V E
Sbjct: 70 KNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAASKILIETLDLHQKEGFEETIVTE 128
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 22 EMVIDLNDTEPVVYRPCRMSHTERQLVRDMVKEMV 126
++ I + +PVVY + E++L+R +V+EM+
Sbjct: 375 KLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMI 409
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.0
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -2
Query: 287 PTDPRLLVGGSV----PFWAFCLELDSPHTIVSHYSFFCTRTIGL--AYDEDDSLALPLS 126
PTDPR +GG + PF S T + +SF T +GL A ED +LP +
Sbjct: 249 PTDPRGYIGGKIIKNKPFRHSFKGFCSVFT-TAGFSFSGTEVVGLAAAEAEDPQKSLPRA 307
Query: 125 T 123
T
Sbjct: 308 T 308
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Frame = -2
Query: 278 PRLLVGGSVPFWAFCLELDS--------PHTIVSHYSFFC 183
P ++GGS+PF +EL S P + +SFFC
Sbjct: 488 PSAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFFC 527
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 109 MVKEMVDNGRARESSSSYASPIVLVQK 189
+VK++V + ARE +SYA P L K
Sbjct: 1153 IVKQLVSSFFAREGIASYAGPSSLTAK 1179
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 203 SHYSFFCTRTIGLAYDEDDSLALPLSTISLTMSLTNCR 90
S +SF +T+ + Y ED+++ L L+ I+ ++L N R
Sbjct: 583 SMFSFKAWKTLLIIYSEDNNIELVLTAIA-KLTLYNYR 619
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 437 NAPSVFQRTIHKILKGAPIKYAVVYMDDIL 526
NAP + QR I I++ +++MD IL
Sbjct: 3 NAPEIVQRLIKMIMRAFYETRHIIFMDAIL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,336
Number of Sequences: 5004
Number of extensions: 52496
Number of successful extensions: 132
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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