Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1902
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase p... 40 0.005
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 38 0.022
AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens ... 37 0.039
AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase p... 37 0.039
U43416-1|AAA86260.1| 861|Homo sapiens replication control prote... 30 4.4
U40152-1|AAC50325.1| 861|Homo sapiens HsORC1 protein. 30 4.4
BC011539-1|AAH11539.1| 861|Homo sapiens origin recognition comp... 30 4.4
AL513218-8|CAI12288.1| 861|Homo sapiens origin recognition comp... 30 4.4
AB053446-1|BAB61903.2| 3434|Homo sapiens KIAA1773 protein protein. 30 4.4
>AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 39.9 bits (89), Expect = 0.005
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 206 RLYVDYRALNRKPKKEHYPLPRVEDQLDLL--SGNTLFTSLDLASGYYQTPVAEASRSKT 379
R+ VDYR LN+ + V L+ + S +T + + DLA+ + PV +A + +
Sbjct: 1 RMIVDYRKLNKGSTPTAAAVSDVVSLLEQINTSPDTWYVATDLANAFCSIPVHKAHQKQF 60
Query: 380 AFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKIL 478
AF +Y + + G +N+P++ + + L
Sbjct: 61 AFGWQGQEYTFTVLSQGYINSPALCHNLVQRDL 93
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 37.9 bits (84), Expect = 0.022
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Frame = +2
Query: 185 KKKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEA 364
KKK+ + +L D RA+N++ + P + ++ + LDL ++ P+ E
Sbjct: 69 KKKSGKYQLLHDLRAVNQQMQPMGALQPGLPVPT-MIPKHWPLIVLDLKDCFFSIPLHEQ 127
Query: 365 SRSKTAFVTL-------DGQYEYNRMPFGLVNAPSVFQ----RTIHKILKGAPIKYAVVY 511
+ AF D +YE+ +P G+ N+P++ Q + + + + P + Y
Sbjct: 128 DIQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSPAICQLYVDQAVEPVRQQCPKVQILHY 187
Query: 512 MDDILI 529
MDD+LI
Sbjct: 188 MDDLLI 193
>AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ45337 fis, clone BRHIP3007960. ).
Length = 248
Score = 37.1 bits (82), Expect = 0.039
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 305 TLFTSLDLASGYYQTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKG 484
T + ++DLA+ ++ PV +A + + AF QY + +P N+P++ I + L
Sbjct: 3 TWYAAIDLANAFFSIPVHKAHQKQFAFSWQGQQYTFTVLPQRYSNSPALCHNLIRRDLDC 62
Query: 485 APIKYAVV---YMDDILI 529
+ ++ Y+DDI++
Sbjct: 63 FLLLQSITLVHYIDDIML 80
>AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 37.1 bits (82), Expect = 0.039
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 206 RLYVDYRALNRKPKKEHYPLPRVEDQLDLL--SGNTLFTSLDLASGYYQTPVAEASRSKT 379
R+ V Y LN+ +P V L+ + S T + + DLA+ ++ V +A + +
Sbjct: 1 RMSVGYCRLNQVVTPIVAAVPDVVSLLEQINTSPGTWYAATDLANAFFSILVHKAHQKQF 60
Query: 380 AFVTLDGQYEYNRMPFGLVNAPSVFQRTI 466
AF QY + +P G +N+P++ I
Sbjct: 61 AFTWQGQQYAFTVLPQGYINSPALCHNLI 89
>U43416-1|AAA86260.1| 861|Homo sapiens replication control protein
1 protein.
Length = 861
Score = 30.3 bits (65), Expect = 4.4
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 182 TRTIGLAYDEDDSLALPLSTISLTMSLTNCRSVCDIRHGRYTTG-SVSLRSITISVMLVN 6
TR GL+Y EDD A P I L + +++ DIR R T S RS + +++
Sbjct: 296 TRETGLSYTEDDKKASPEHRIILRTRIAASKTI-DIREERTLTPISGGQRSSVVPSVILK 354
Query: 5 P 3
P
Sbjct: 355 P 355
>U40152-1|AAC50325.1| 861|Homo sapiens HsORC1 protein.
Length = 861
Score = 30.3 bits (65), Expect = 4.4
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 182 TRTIGLAYDEDDSLALPLSTISLTMSLTNCRSVCDIRHGRYTTG-SVSLRSITISVMLVN 6
TR GL+Y EDD A P I L + +++ DIR R T S RS + +++
Sbjct: 296 TRETGLSYTEDDKKASPEHRIILRTRIAASKTI-DIREERTLTPISGGQRSSVVPSVILK 354
Query: 5 P 3
P
Sbjct: 355 P 355
>BC011539-1|AAH11539.1| 861|Homo sapiens origin recognition
complex, subunit 1-like (yeast) protein.
Length = 861
Score = 30.3 bits (65), Expect = 4.4
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 182 TRTIGLAYDEDDSLALPLSTISLTMSLTNCRSVCDIRHGRYTTG-SVSLRSITISVMLVN 6
TR GL+Y EDD A P I L + +++ DIR R T S RS + +++
Sbjct: 296 TRETGLSYTEDDKKASPEHRIILRTRIAASKTI-DIREERTLTPISGGQRSSVVPSVILK 354
Query: 5 P 3
P
Sbjct: 355 P 355
>AL513218-8|CAI12288.1| 861|Homo sapiens origin recognition
complex, subunit 1-like (yeast) protein.
Length = 861
Score = 30.3 bits (65), Expect = 4.4
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 182 TRTIGLAYDEDDSLALPLSTISLTMSLTNCRSVCDIRHGRYTTG-SVSLRSITISVMLVN 6
TR GL+Y EDD A P I L + +++ DIR R T S RS + +++
Sbjct: 296 TRETGLSYTEDDKKASPEHRIILRTRIAASKTI-DIREERTLTPISGGQRSSVVPSVILK 354
Query: 5 P 3
P
Sbjct: 355 P 355
>AB053446-1|BAB61903.2| 3434|Homo sapiens KIAA1773 protein protein.
Length = 3434
Score = 30.3 bits (65), Expect = 4.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 1 LGFTNITEMVIDLNDTEPVVYRPCRMSHTERQLVRDMVKEMVDN 132
+G +T MVID ND P + +P + +E L+ + ++ N
Sbjct: 2394 VGSATLTVMVIDTNDNRPTIPQPWELRVSEDALLGSEIAQVTGN 2437
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,371,305
Number of Sequences: 237096
Number of extensions: 1961480
Number of successful extensions: 3573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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