Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1902
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    96   2e-20
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    96   2e-20
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    96   2e-20
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    29   1.6  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    29   1.6  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    29   1.6  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    29   1.6  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    29   1.6  
Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/115 (40%), Positives = 72/115 (62%)
 Frame = +2

Query: 185  KKKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEA 364
            KKK+   R+ +DYR +N+  K   +PLP +E  L  L+G  L+T  D+ +G++Q P+ E 
Sbjct: 1072 KKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEK 1131

Query: 365  SRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
            S+  TAF      +E+N +PFGLV +P++FQ T+ +I+       A VY+DD+LI
Sbjct: 1132 SKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI 1186



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +1

Query: 1    LGFTNITEMVIDLND-TEPVVYRPCRMSHTERQLVRDMVKEMVDNGRARESSSSYASPIV 177
            LG  + TE VI+L +  EP+  +P  +    +  +R M+++M++    RES S ++SP+V
Sbjct: 1010 LGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVV 1069

Query: 178  LVQKKE 195
            LV+KK+
Sbjct: 1070 LVKKKD 1075


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/115 (40%), Positives = 72/115 (62%)
 Frame = +2

Query: 185  KKKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEA 364
            KKK+   R+ +DYR +N+  K   +PLP +E  L  L+G  L+T  D+ +G++Q P+ E 
Sbjct: 975  KKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEK 1034

Query: 365  SRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
            S+  TAF      +E+N +PFGLV +P++FQ T+ +I+       A VY+DD+LI
Sbjct: 1035 SKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI 1089



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +1

Query: 1    LGFTNITEMVIDLND-TEPVVYRPCRMSHTERQLVRDMVKEMVDNGRARESSSSYASPIV 177
            LG  + TE VI+L +  EP+  +P  +    +  +R M+++M++    RES S ++SP+V
Sbjct: 913  LGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVV 972

Query: 178  LVQKKE 195
            LV+KK+
Sbjct: 973  LVKKKD 978


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/115 (40%), Positives = 72/115 (62%)
 Frame = +2

Query: 185  KKKNSEKRLYVDYRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEA 364
            KKK+   R+ +DYR +N+  K   +PLP +E  L  L+G  L+T  D+ +G++Q P+ E 
Sbjct: 986  KKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEK 1045

Query: 365  SRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMDDILI 529
            S+  TAF      +E+N +PFGLV +P++FQ T+ +I+       A VY+DD+LI
Sbjct: 1046 SKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI 1100



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +1

Query: 1    LGFTNITEMVIDLND-TEPVVYRPCRMSHTERQLVRDMVKEMVDNGRARESSSSYASPIV 177
            LG  + TE VI+L +  EP+  +P  +    +  +R M+++M++    RES S ++SP+V
Sbjct: 924  LGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVV 983

Query: 178  LVQKKE 195
            LV+KK+
Sbjct: 984  LVKKKD 989


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 263 LPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEASRSKTAFVTLDGQYEY 412
           L ++E+Q D L    L  +  L+   ++  + E S S+   V +DG+Y+Y
Sbjct: 73  LDQLEEQDDALHYFVLVATSRLSDEDFENSLKEVSLSQKLMVRIDGEYKY 122


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 QTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMD 517
           Q P +  + S+ +   + G    NRMP G+  +PS  Q+++H I  G   + +   +D
Sbjct: 271 QPPSSSRTASERSMSAMLGTPYGNRMPAGV--SPSASQKSVHSIANGCYSRSSAALLD 326


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 QTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMD 517
           Q P +  + S+ +   + G    NRMP G+  +PS  Q+++H I  G   + +   +D
Sbjct: 319 QPPSSSRTASERSMSAMLGTPYGNRMPAGV--SPSASQKSVHSIANGCYSRSSAALLD 374


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 QTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMD 517
           Q P +  + S+ +   + G    NRMP G+  +PS  Q+++H I  G   + +   +D
Sbjct: 475 QPPSSSRTASERSMSAMLGTPYGNRMPAGV--SPSASQKSVHSIANGCYSRSSAALLD 530


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 QTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMD 517
           Q P +  + S+ +   + G    NRMP G+  +PS  Q+++H I  G   + +   +D
Sbjct: 475 QPPSSSRTASERSMSAMLGTPYGNRMPAGV--SPSASQKSVHSIANGCYSRSSAALLD 530


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 QTPVAEASRSKTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKILKGAPIKYAVVYMD 517
           Q P +  + S+ +   + G    NRMP G+  +PS  Q+++H I  G   + +   +D
Sbjct: 319 QPPSSSRTASERSMSAMLGTPYGNRMPAGV--SPSASQKSVHSIANGCYSRSSAALLD 374


>Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical
           protein F15B9.6 protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 KTAFVTLDGQYEYNRMPFGLVNAPSVFQRTIHKI 475
           +T FVT DG       P G +N  S+   T+HKI
Sbjct: 277 ETQFVTFDGNLHAAMKPMGTLN--SILSATVHKI 308


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 252 NTTPYQESRISWTYYPVTPYLRHWTLLPGTIKHQSPRPPVVKLPL*HLMGSMNTTACLS 428
           NTTP ++++ + +Y  +          P    + SP P   +L   +L  S NT  CLS
Sbjct: 448 NTTPTEQTKPTLSYAKIVEKFSKTDQQPAKSDNSSPSPRAQRLEQ-NLATSANTIPCLS 505


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 404 YEYNRMPFGLVNAPSVF--QRTIHKILKGAPIKY 499
           + Y++ P G    P V   QR  HK + GAP+ Y
Sbjct: 430 FSYSKCPEGFSEFPRVTSGQRWCHKYVHGAPLPY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,231
Number of Sequences: 27780
Number of extensions: 292139
Number of successful extensions: 708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)